PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023213-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 288aa    MW: 32081.5 Da    PI: 9.2332
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023213-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.2e-31110168159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDg++WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++edp +v++tYeg Hnh+
  SMil_00023213-RA_Salv 110 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNEDPLYVVTTYEGIHNHK 168
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3296170IPR003657WRKY domain
SuperFamilySSF1182905.49E-28103170IPR003657WRKY domain
PROSITE profilePS5081130.71105170IPR003657WRKY domain
SMARTSM007745.4E-37110169IPR003657WRKY domain
PfamPF031062.2E-24111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDAPLMIMAD DHSYPIKPGS SLGQAHEPGF EVSDFFEFND WIEEAPSFSS PLSAASYDSQ  60
NPSYTPNAGS SWSSSSSSSS FLEGAITRDS GCGREKEKVA FKTKSEVEVL DDGFKWRKYG  120
KKMVKNSPNP RNYYRCSVEG CPVKKRVERD NEDPLYVVTT YEGIHNHKGP HQATKAWRRR  180
RLCRRSIQSR GRSQFVRKAK GDRGSVRRRR GNNEGEADGW SAEGFLQGGK SWWRSSGERD  240
LLSSRWGGSL GEGRCRPCTT AEGLCSLAGK GCSMGGGGER DRERDHLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24101170877Probable WRKY transcription factor 4
2lex_A3e-24101170877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181WRRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231660.0KM823166.1 Salvia miltiorrhiza WRKY protein (WRKY43) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100937.13e-70probable WRKY transcription factor 50
TrEMBLA0A0D5Y9A91e-111A0A0D5Y9A9_SALMI; WRKY protein
STRINGMigut.E01579.1.p1e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.17e-41WRKY DNA-binding protein 50