PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00023088-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 884aa    MW: 98523.6 Da    PI: 6.0043
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00023088-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.43.2e-153389557
                           SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +++++q+e+Le++++ +++p++ +r+++ +      g++ +q kvWFqNrR +ek+
  SMil_00023088-RA_Salv 33 ARYSEDQIEVLEKAYAVCSNPTHFQRQQIMRDQpalrGIDHKQLKVWFQNRRCREKQ 89
                           679***************************999999*******************97 PP
2START117.42.1e-372074122202
                            HHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                  START   2 laeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                            laee+ +e+++ka  ++ +Wv ++  +++++++  ++ +s ++ g a+ra + v+ ++ +  e++ d++  W+++++ ++++++   +
  SMil_00023088-RA_Salv 207 LAEETRKEFLSKAIGTAINWVPVPwPKLQSPVSAGIIYTSSSCIGVAARAYVTVPLEPFKIIEIFKDRA-SWSRHCRNMDVIARFPAN 293
                            789999*********************************999*****************7777777777.**************9988 PP

                            ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
                  START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehv 170
                              g+++l++++++a++ +++ Rdf+++Ry+  l +g +v +++S++  +  p+     ++vR++ll Sg++i+p+++g s++  veh 
  SMil_00023088-RA_Salv 294 ngGTIELIYTQYYAPTMMACaRDFWTLRYTSLLDDGCFVMCERSISGSDATPSspaALEFVRGKLLASGCMIRPSEGG-STIYLVEHL 380
                            88********************************************9988887788899****************999.********* PP

                            E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXX CS
                  START 171 dlkgrlphwllrslvksglaegaktwvatlqr 202
                            dl+++++++++r+l++s+ + + k+ ++ l++
  SMil_00023088-RA_Salv 381 DLEASSVPEVVRPLYESSEIVAKKMILSVLNY 412
                            *********************99999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.71E-122391No hitNo description
SuperFamilySSF466892.47E-122491IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-132488IPR009057Homeodomain-like
PROSITE profilePS5007113.9122690IPR001356Homeobox domain
SMARTSM003894.0E-82894IPR001356Homeobox domain
PfamPF000468.8E-133389IPR001356Homeobox domain
Gene3DG3DSA:1.20.5.1707.3E-489135No hitNo description
PROSITE profilePS5084821.565204425IPR002913START domain
SMARTSM002341.6E-23206416IPR002913START domain
Gene3DG3DSA:3.30.530.201.7E-19206413IPR023393START-like domain
PfamPF018523.9E-34207412IPR002913START domain
SuperFamilySSF559611.33E-24207414No hitNo description
PfamPF086704.9E-21748883IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
LVVKMARTEV MVGESIQKGK GVRKRRQEGG KYARYSEDQI EVLEKAYAVC SNPTHFQRQQ  60
IMRDQPALRG IDHKQLKVWF QNRRCREKQK KESGDVASEN RRLNEANKIL KEENDGLQKK  120
LTQLISENGQ LRNQVLGADT SSYSQYIRFV TMLKDQMFIL PCNMDVVLLF WSKVLTSTIS  180
TYQLGHQPEA SNPQLPVIVA DKGLVSLAEE TRKEFLSKAI GTAINWVPVP WPKLQSPVSA  240
GIIYTSSSCI GVAARAYVTV PLEPFKIIEI FKDRASWSRH CRNMDVIARF PANNGGTIEL  300
IYTQYYAPTM MACARDFWTL RYTSLLDDGC FVMCERSISG SDATPSSPAA LEFVRGKLLA  360
SGCMIRPSEG GSTIYLVEHL DLEASSVPEV VRPLYESSEI VAKKMILSVL NYIDNVVNEK  420
NGIQTLDPFE EPTFRRSFSH RLSRGFNDAV NCFSEDGWAL MNPDASDDVI MSIRRTKPFG  480
VSANFDSIIC VKSSLLLQNV FPASMVRLLK ERRSNWMNFD FTSHSVAFSR AACFAFPGVG  540
THNLSETAVL LGHTNHEDEI LEIVRFDNIP DRQHNASSGD LYHLQISNGM EDTDFGTCSE  600
LIFAPIDRNI PDDAVLLSSG FRIYLGTSSY SNLASNEAYT ISNGQAVINN LPTMLIIAFQ  660
FPFQSHLVED VEAMARDYLR HVISCVKQIS LEAMLPGLTP ETNSIEANLA MEFNVTSELD  720
FVVNLANLMC QCYRQFLAFN NAGMKVYCLF ASNRSSLGVD MLGFNCHSTD SVLEQMQSHP  780
YAILCFSLVQ SVPVCIYANL AGLTMLETTP DNLQALSVDR ILGSSNNLSL YSVLPTILQQ  840
GYAMLPPGYT LSVMNRGVSY GQAVVWQVQA SDGSVNGLGL AFID
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834934.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X4
TrEMBLA0A4D8ZLS60.0A0A4D8ZLS6_SALSN; Homeobox-leucine zipper protein
STRINGMigut.F01757.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1565734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein