PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00023073-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 342aa MW: 38406.8 Da PI: 6.8404

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00023073-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.5	2.6e-53	19	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+++yL+ kv + + i+evd++++ePw+Lp ++k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgk SMil_00023073-RA_Salv 19 LPPGFRFHPTDEELITFYLASKVFNGAFCG-VDIAEVDLNRCEPWELPDAAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGK 105 79***********************777.34***********8888999***************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ev+s+ +g l g+kktLvfykgrap+gekt+Wvmheyrl SMil_00023073-RA_Salv 106 DREVVSAaNGGLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 146 *9888999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-62	15	168	IPR003441	NAC domain
PROSITE profile	PS51005	59.711	19	168	IPR003441	NAC domain
Pfam	PF02365	7.2E-28	20	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MLGMEEILCE LQRDDQQGLP PGFRFHPTDE ELITFYLASK VFNGAFCGVD IAEVDLNRCE 60 PWELPDAAKM GEREWYFFSL RDRKYPTGLR TNRATGAGYW KATGKDREVV SAANGGLLGM 120 KKTLVFYKGR APRGEKTKWV MHEYRLDGDF SCRHTGKEEW VICRIFHKMG EKKSLMPGQS 180 YLLRGSSFYN PITNSLPALL DPHQDLPNPL LYHTSCHQDQ SELKALINPL VSRPDFLPVG 240 INPIQAKDSS SSFFLKPLMS QDLSLKELSN AIAKQCKKES DFGSHLQYVC GGDGVGKYEN 300 PFVFGGNLAI PSVTVGDHIV TAAMDAAAID HVMSTEPAFR WW

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MLGMEEILCE LQRDDQQGLP PGFRFHPTDE ELITFYLASK VFNGAFCGVD IAEVDLNRCE  60
PWELPDAAKM GEREWYFFSL RDRKYPTGLR TNRATGAGYW KATGKDREVV SAANGGLLGM  120
KKTLVFYKGR APRGEKTKWV MHEYRLDGDF SCRHTGKEEW VICRIFHKMG EKKSLMPGQS  180
YLLRGSSFYN PITNSLPALL DPHQDLPNPL LYHTSCHQDQ SELKALINPL VSRPDFLPVG  240
INPIQAKDSS SSFFLKPLMS QDLSLKELSN AIAKQCKKES DFGSHLQYVC GGDGVGKYEN  300
PFVFGGNLAI PSVTVGDHIV TAAMDAAAID HVMSTEPAFR WW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-51	16	168	17	168	NAC domain-containing protein 19
3swm_B	6e-51	16	168	17	168	NAC domain-containing protein 19
3swm_C	6e-51	16	168	17	168	NAC domain-containing protein 19
3swm_D	6e-51	16	168	17	168	NAC domain-containing protein 19
3swp_A	6e-51	16	168	17	168	NAC domain-containing protein 19
3swp_B	6e-51	16	168	17	168	NAC domain-containing protein 19
3swp_C	6e-51	16	168	17	168	NAC domain-containing protein 19
3swp_D	6e-51	16	168	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074066.1	1e-148	protein CUP-SHAPED COTYLEDON 3
Swissprot	Q9S851	1e-103	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A2G9GXG5	1e-140	A0A2G9GXG5_9LAMI; Uncharacterized protein
STRING	POPTR_0002s00730.1	1e-127	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-105	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]