PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00022963-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 272aa MW: 29944.7 Da PI: 6.9399

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00022963-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.9	1.4e-30	89	142	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl SMil_00022963-RA_Salv 89 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 142 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	86	145	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-20	86	146	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-31	88	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	90	142	IPR006447	Myb domain, plants
Pfam	PF00249	9.8E-8	92	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MREDESNWFS KWEEELPSPE DLMPLSQSLI TPDLALAFNI HNPHQQQSLH PPPPPPLPPQ 60 PNSSAEFDSP ELSGAGGGGG DEPARTLKRP RLVWTPQLHK RFVDAVAHLG IKNAVPKTIM 120 QLMSVDGLTR ENVASHLQKY RLYLKRMQGI SSNGAAGANS PAALSDAATD HLFASSPVPP 180 HFLHPARATS DHFLPFVPVA AMQQIHHQQF RHFGSSPPNA QFEHPFIRQP QPQPQPQRMP 240 TNTPPPAYAD DLDPPNAANG RKILTLFPTG DH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-31	89	145	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070088.1	1e-127	transcription factor PCL1
Swissprot	O22210	1e-61	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A2G9HQ47	1e-120	A0A2G9HQ47_9LAMI; Uncharacterized protein
TrEMBL	A0A2Z7CKV3	1e-120	A0A2Z7CKV3_9LAMI; Transcription factor LUX-like
STRING	XP_009790047.1	1e-112	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2432	23	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05090.1	5e-67	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]