PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022348-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 205aa    MW: 22814 Da    PI: 4.8679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022348-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-054870123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C + F++   L  H+++H
  SMil_00022348-RA_Salv 48 YTCTFCRREFRSAQALGGHMNVH 70
                           9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-64575No hitNo description
SMARTSM003550.00664870IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-54871IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1574875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MMWNNNNNSN NNHNQKSPDD DDDSWEVRAF EEDTTGNLLG CTWPPRSYTC TFCRREFRSA  60
QALGGHMNVH RRDRARLHEM PPLAPSPPPP ILIQTGHEFV ANGLCLLYPL PNPNSIIFPN  120
PLPIDYSSPI QHLATNIPTE TAPSSVVSSV CHSTNTEPSA SNSNDENNNN NNNNSRSPGE  180
NTKDLAGEEE LDLELRLGRR LPPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-134370229superman protein
2l1o_A4e-134370229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012857465.13e-67PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A4D8YXM72e-84A0A4D8YXM7_SALSN; Uncharacterized protein
STRINGMigut.E00926.1.p3e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-33C2H2 family protein