PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00022172-RA_Salv | ||||||||
Common Name | WRKY56 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 304aa MW: 34544 Da PI: 5.0101 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.3 | 8.8e-30 | 154 | 212 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +dp +++itY+ eH h+ SMil_00022172-RA_Salv 154 SDMWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTDPGMFIITYTAEHSHS 212 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-30 | 139 | 214 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.409 | 148 | 214 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-26 | 149 | 214 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.5E-35 | 153 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-25 | 155 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MSELVSDMAD WSLQAIVRGS SGEFGKMDMD GPDSFLQALT SDHHHQFDQD LRSSFPDIFE 60 GSTGSSGDEL EELYKPFYPA PVSHESLPDH TTLEFQEQEQ NAAEDKPSTH DQSDQSSVTS 120 PVASVTAVYT PKYKKRKNQH KRVVIQVSAE GLTSDMWAWR KYGQKPIKGS PYPRSYYRCS 180 SSKGCLARKQ VEQSCTDPGM FIITYTAEHS HSQPTRRNSL AGTVRQKFPS PKQDKTTENS 240 KSRQQQQQQP ELMDVKPRIK QEEDAKPSDE FDVSDFVFNE DFFSGLEEFD EFAQPFPVRP 300 CSWV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-18 | 154 | 215 | 17 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-18 | 154 | 215 | 17 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM823179 | 0.0 | KM823179.1 Salvia miltiorrhiza WRKY protein (WRKY56) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081142.2 | 1e-112 | probable WRKY transcription factor 29 | ||||
TrEMBL | A0A0D5Y9B8 | 0.0 | A0A0D5Y9B8_SALMI; WRKY protein | ||||
STRING | Migut.A00718.1.p | 1e-109 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5781 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01250.1 | 3e-41 | WRKY family protein |