PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022098-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 306aa    MW: 34597.4 Da    PI: 9.7376
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022098-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.46e-431052322134
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssas 83 
                            +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LG+dk+sktieWL++++k+aik+l ++      +         ++s+s +s
  SMil_00022098-RA_Salv 105 TGKKDRHSKICTAQGIRDRRMRLSLQVARKFFDLQDMLGYDKASKTIEWLFTKSKKAIKDLGNNvsmsvsD---------GKSESFVS 183
                            79***********************************************************9994443321.........23333333 PP

                    TCP  84 nsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                            + +  +   ++ + +++++ + ++ +  +esr+kararar rt+ekm+ k 
  SMil_00022098-RA_Salv 184 ECEVVSGI-EE-NCSNADEGERKVGSCTRESREKARARARCRTEEKMMGKR 232
                            11111111.12.33333444444678889******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-38105229IPR005333Transcription factor, TCP
PROSITE profilePS5136936.556107165IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.524210227IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MHSPLETPKK VGIKRIQHFT TPKTDTMFPF GDNPLEKRPC FDQIQNPIES QFFSNFPSPF  60
FDEHELPLNQ IFPKPIPSDH PKKASDPAKA KQKTRRSLPL PRKRTGKKDR HSKICTAQGI  120
RDRRMRLSLQ VARKFFDLQD MLGYDKASKT IEWLFTKSKK AIKDLGNNVS MSVSDGKSES  180
FVSECEVVSG IEENCSNADE GERKVGSCTR ESREKARARA RCRTEEKMMG KRVQPDYAPL  240
LHPPSDAGTI ENLLGSSTSA ALIDPTTTFM GFLGNWDMLS IDRLNYAGNP NSIYSPTSPD  300
FPLFHQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552305.11e-73transcription factor TCP12-like
TrEMBLA0A4D8ZGP11e-122A0A4D8ZGP1_SALSN; Uncharacterized protein
STRINGSolyc04g006980.1.11e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-32TCP domain protein 12