PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00021799-RA_Salv | ||||||||
Common Name | WRKY46 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 306aa MW: 33427 Da PI: 6.9005 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.2e-30 | 142 | 200 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC+++k+ver+++dp ++++tY+ eHnh+ SMil_00021799-RA_Salv 142 SDVWSWRKYGQKPIKGSPYPRGYYRCSTSkGCMARKQVERNRSDPGMFIVTYTAEHNHP 200 79************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-31 | 130 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-27 | 136 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.416 | 136 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-37 | 141 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-26 | 143 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEDDWDLHAV VRGCAAATTN TRSLQALYGH QQACSSFSAS SFQDLLEPRR NGVVREGLID 60 LYNYKPLFPN SEVPFSLPVS TISALVGSQD PPPQTQLRPK HHSFSVSNAS KTSASHSPTP 120 RSKRRKTHTK KVCHVAAENL SSDVWSWRKY GQKPIKGSPY PRGYYRCSTS KGCMARKQVE 180 RNRSDPGMFI VTYTAEHNHP MPTHRNSLAG STRNKPADPT GTSFSPEVSP ATSLSPPAEK 240 LESSREEELA EDDDDGVFSV SEMALDDDFF AGLEDFTAAD PDCASGHLQF PWLSTSATTT 300 TTAAGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-21 | 129 | 203 | 5 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-21 | 129 | 203 | 5 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 127 | KRRKTH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823169 | 0.0 | KM823169.1 Salvia miltiorrhiza WRKY protein (WRKY46) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092990.1 | 1e-121 | WRKY transcription factor 22 | ||||
Swissprot | O04609 | 1e-85 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | A0A0D5Y9B4 | 0.0 | A0A0D5Y9B4_SALMI; WRKY protein | ||||
STRING | Migut.B01797.1.p | 1e-99 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2591 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-84 | WRKY family protein |