PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020963-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 190aa    MW: 21370.9 Da    PI: 10.2848
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020963-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-3047105259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  SMil_00020963-RA_Salv  47 SDCWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCKTDASMLIITYTSTHNHP 105
                            699***********************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-3139107IPR003657WRKY domain
SuperFamilySSF1182907.06E-2643107IPR003657WRKY domain
SMARTSM007742.4E-3446106IPR003657WRKY domain
PROSITE profilePS5081130.73347107IPR003657WRKY domain
PfamPF031062.9E-2548105IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MQESDQTHSA ADHSHANKKR KMGERVVVAV KIEGKDKKQH RNEGPPSDCW SWRKYGQKPI  60
KGSPYPRGYY RCSTSKGCSA KKQVERCKTD ASMLIITYTS THNHPDPAPS SLSPHTKLTN  120
AHHSHPTTPN QEQESETNPE ETRIPEMTVF NSPNPHSFPR RITQSPLRKS FKHLAALRRR  180
GVAAAEIGGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-22481071879Disease resistance protein RRS1
5w3x_D5e-22481071879Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231710.0KM823171.1 Salvia miltiorrhiza WRKY protein (WRKY48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079549.19e-68probable WRKY transcription factor 35
SwissprotQ9LP562e-33WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A0D5Y9C71e-101A0A0D5Y9C7_SALMI; WRKY protein
STRINGMigut.D00078.1.p4e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112812025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-35WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]