PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020963-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 190aa MW: 21370.9 Da PI: 10.2848 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 3e-30 | 47 | 105 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+ SMil_00020963-RA_Salv 47 SDCWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCKTDASMLIITYTSTHNHP 105 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-31 | 39 | 107 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-26 | 43 | 107 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-34 | 46 | 106 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.733 | 47 | 107 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-25 | 48 | 105 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MQESDQTHSA ADHSHANKKR KMGERVVVAV KIEGKDKKQH RNEGPPSDCW SWRKYGQKPI 60 KGSPYPRGYY RCSTSKGCSA KKQVERCKTD ASMLIITYTS THNHPDPAPS SLSPHTKLTN 120 AHHSHPTTPN QEQESETNPE ETRIPEMTVF NSPNPHSFPR RITQSPLRKS FKHLAALRRR 180 GVAAAEIGGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-22 | 48 | 107 | 18 | 79 | Disease resistance protein RRS1 |
5w3x_D | 5e-22 | 48 | 107 | 18 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823171 | 0.0 | KM823171.1 Salvia miltiorrhiza WRKY protein (WRKY48) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079549.1 | 9e-68 | probable WRKY transcription factor 35 | ||||
Swissprot | Q9LP56 | 2e-33 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0D5Y9C7 | 1e-101 | A0A0D5Y9C7_SALMI; WRKY protein | ||||
STRING | Migut.D00078.1.p | 4e-62 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11281 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-35 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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