PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020925-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 197aa    MW: 21623.1 Da    PI: 7.4419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020925-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-19656256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                           +++GVr++  +g+Wv+eIr+p        kr++lg+f tae Aa+a+++a+  ++g+
  SMil_00020925-RA_Salv  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEAAARAYDQAAILMNGH 56
                           89****999.**********8.....335**********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-38669IPR001471AP2/ERF domain
PROSITE profilePS5103221.931663IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-32664IPR001471AP2/ERF domain
PfamPF008471.2E-11656IPR001471AP2/ERF domain
CDDcd000182.40E-21663No hitNo description
PRINTSPR003672.4E-10718IPR001471AP2/ERF domain
PRINTSPR003672.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVQPNKFRGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE AAARAYDQAA ILMNGHNAKT  60
NFPTGNDGSD QSTDAPSSAQ AVLSEMLGAK LKKCCKNPAP SITCLRLDND NSNIGVWQKR  120
AGRGSGSQWV MKVELKKATP SHGSPSQSSW STSSEVDEAG DAMDEENRVA LQMVEELLYW  180
NGSTPAVSNE QDEGKDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15763663ATERF1
3gcc_A2e-15763663ATERF1
5wx9_A2e-153631172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023536493.11e-80ethylene-responsive transcription factor SHINE 2 isoform X1
SwissprotQ9XI331e-68WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A4D8ZSK51e-112A0A4D8ZSK5_SALSN; Uncharacterized protein
STRINGXP_008466408.12e-77(Cucumis melo)
STRINGXP_004136348.12e-77(Cucumis sativus)
STRINGXP_004162048.12e-77(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.17e-59ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]