PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00020476-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 239aa MW: 25887.6 Da PI: 7.8982 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 31.4 | 2.6e-10 | 101 | 120 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C+nC tt+TplWR+gp+g+k SMil_00020476-RA_Salv 101 CANCDTTSTPLWRNGPRGPK 120 ******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.0017 | 95 | 135 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.356 | 95 | 118 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.33E-5 | 98 | 119 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.5E-8 | 99 | 120 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.2E-7 | 101 | 120 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MLFSMANGHR GFDEGELYSF ASSSPSASVD CTLSLGTPST RVTNESSHHH HEKKRSSCMS 60 NFGWNILPSK HTPPPSSAKP HRGSTNTNSS SGGDPLLARR CANCDTTSTP LWRNGPRGPK 120 VIFHFLPLAY MYAFAMQCLR YSLQEGREKG DGGGATSNGG GANGAHVEAQ YMMNGSWTPS 180 AQKAPCYSSG YGSEYRFMED DAAVDHRDSE MSGGGGGVPF MSWRFNVTDR PSLVHDFTR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097106.1 | 2e-95 | GATA transcription factor 18-like | ||||
TrEMBL | A0A2G9HG20 | 4e-97 | A0A2G9HG20_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_033370m | 2e-61 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3818 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50870.1 | 1e-35 | GATA family protein |