PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020361-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 344aa    MW: 40180.4 Da    PI: 10.1607
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020361-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.8e-14491271294
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                            k + l+lpkk +e + +k   +  +++ de+ r+W+v++  +k+s r+  + GWk+ ++an ++ gD+++F++++  +  l++
  SMil_00020361-RA_Salv  49 KINVLSLPKKVIEYYHLK--IPNIISFVDEQRREWDVTVLKDKRSYRCS-AVGWKRVCEANLIDIGDVCIFEFMQ-GRIDLYI 127
                            55789*******888888..6779***************6666666654.45********************886.3333344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.9E-1535121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-1436122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8738133IPR003340B3 DNA binding domain
SMARTSM010191.3E-641133IPR003340B3 DNA binding domain
PfamPF023622.0E-1149130IPR003340B3 DNA binding domain
CDDcd100176.80E-1053130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDTTPHPHRR RVPSTRRNKK LEDDAEISEP GLAVPPEIPY FVWRAKPGKI NVLSLPKKVI  60
EYYHLKIPNI ISFVDEQRRE WDVTVLKDKR SYRCSAVGWK RVCEANLIDI GDVCIFEFMQ  120
GRIDLYIRIR INRAHERLPT GKSSFCVEST NRSKKEEADS PKNIIKTYNL KIPNIISLVD  180
ERGKKWETKI LKRRSGDLAF PESVWRMTRK KDAEEKEVEQ VYKEPLHENN WDEIAEDESG  240
MQRSILKGKQ KLNSTSSSTH VRRCLRKKNA SGGKKGFEEE KCAKTDKETC SNCNDCKESR  300
TKMDISKAKR KLKSPSPHEP VRRRARKDKT CIYLICHFFL AMFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308326KRKLKSPSPHEPVRRRARK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-07B3 family protein