PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00020273-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 249aa MW: 28847.1 Da PI: 9.4321

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00020273-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.2	1e-46	11	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGfrFhPt+eel+++yLk v gkk++ +vi ++iy+++P+dLpk +k++e+ewyfF++rd+k+ g r+nr+t++g+Wkatg+d SMil_00020273-RA_Salv 11 LPGFRFHPTEEELLNFYLKSMVFGKKFRG-DVIGFLNIYNYDPKDLPKLAKTGEREWYFFVPRDRKHGGGGRPNRTTAKGFWKATGSD 97 59************************9.99***********999999******************************* PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++ glkktLvfy+grap+g+kt+W+m+eyrl SMil_00020273-RA_Salv 98 RQIMGGsdPKQTLGLKKTLVFYEGRAPRGRKTNWIMNEYRL 138 97667788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.861	10	156	IPR003441	NAC domain
SuperFamily	SSF101941	2.48E-53	11	156	IPR003441	NAC domain
Pfam	PF02365	3.2E-25	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDEESKYELK LPGFRFHPTE EELLNFYLKS MVFGKKFRGD VIGFLNIYNY DPKDLPKLAK 60 TGEREWYFFV PRDRKHGGGG RPNRTTAKGF WKATGSDRQI MGGSDPKQTL GLKKTLVFYE 120 GRAPRGRKTN WIMNEYRLPD YCSAPKDIVL CKIYMKATSL KVLEQRAAME EGAKTHASSS 180 LDSASLQFEG KELKREREER ESRPCSSLVL PNNIAELQVP KMSMDWMHDS FWTNLSPWLD 240 NFTPFMPMC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-44	2	156	6	168	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088680.1	1e-124	NAC domain-containing protein 35
Swissprot	Q10S65	1e-82	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2G9I7J9	1e-122	A0A2G9I7J9_9LAMI; Uncharacterized protein
STRING	Migut.B00028.1.p	1e-122	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	6e-97	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]