PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020261-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 237aa    MW: 26696.2 Da    PI: 9.9815
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020261-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.3e-11121162351
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                             +GV+++    +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  SMil_00020261-RA_Salv 121 MRGVYFKN--LKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 162
                            79***966..5********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-5120163IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-8120165IPR016177DNA-binding domain
SMARTSM003801.2E-4120177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-6127167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRPSTNSVPC LVGEVEPAMV SLRRRKLLGL CSGFNSFLAP ISPIFEQGQN PQTAESTKPV  60
SVHPLPLNDS RKPKEETSLE AGPGSSNMSA ASSASIQHFP EVKRRKRHRR KHVENQEPCI  120
MRGVYFKNLK WQAAIKVDKK QIHLGTVGSQ EEAARLYDRA AFMCGREPNF ELSEEEKQEL  180
RKFNWDEFLA ITRSAITNKK SQRRNGTGPR RKLLDHDWEG EQGRSGISAS DDDMLAP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089068.11e-120ethylene-responsive transcription factor-like protein At4g13040 isoform X1
TrEMBLA0A4D9BZE01e-135A0A4D9BZE0_SALSN; Uncharacterized protein
STRINGPOPTR_0002s24750.42e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-47ERF family protein