PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00020186-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | C2H2 | ||||||||
Protein Properties | Length: 417aa MW: 46630.3 Da PI: 6.6059 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00019 | 341 | 363 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F++ L H r+H SMil_00020186-RA_Salv 341 HVCPFCDRVFKNGQALGGHKRSH 363 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 0.018 | 10 | 25 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.972 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.39 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.4E-6 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.889 | 264 | 291 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-8 | 264 | 286 | No hit | No description |
SMART | SM00355 | 4.2 | 264 | 286 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.4E-8 | 264 | 288 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 266 | 286 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-8 | 336 | 363 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 336 | 363 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.141 | 341 | 363 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 341 | 363 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.7E-8 | 341 | 363 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 343 | 363 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MAFRVQAVQK KFPCGKSLGG HMRSHVVANS AEFEDLSEQF LNESGNGYVL RENPKKTWRA 60 AREEKVCKQC GKGFQSMKAL CGHMACHSDK ERGAKDDHSY SWTTENHKLL FDTHSDTEEV 120 VRTRSRRCKK VNYNGSSSVS EIDGQEHEID EMAVCLMMLS RDSGGVMNSV VESSDNNSVV 180 VETKSSSPEV KMEDSDSDSG YFLDECAKGE SEVSVDWFRR SGGFGNAYDD DDDDDDDDDG 240 ESRKRKSWNE SVKNGGEAHK KSKYECFNCN KSFKSYQALG GHRPCHKRSN AYGECGENSP 300 DAAAYYRSSS AKFVESSSKR KESSASEKKS SKTKKNNNKP HVCPFCDRVF KNGQALGGHK 360 RSHFLTGHDE SSSRSLVEKP DDDIHDLLDL NLPARRLMTN ISLGNGLQEQ YDLCLLT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 246 | SRKRKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075585.1 | 1e-133 | uncharacterized protein LOC105160026 | ||||
TrEMBL | A0A4D9BP64 | 1e-160 | A0A4D9BP64_SALSN; Uncharacterized protein | ||||
STRING | Migut.L01205.1.p | 1e-123 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1343 | 22 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 6e-40 | C2H2-like zinc finger protein |