PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020124-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 347aa    MW: 37944.1 Da    PI: 8.2869
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020124-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.9e-31188246259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  SMil_00020124-RA_Salv 188 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 246
                            699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925182248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.5E-31184248IPR003657WRKY domain
SuperFamilySSF1182901.96E-26185248IPR003657WRKY domain
SMARTSM007741.4E-37187247IPR003657WRKY domain
PfamPF031066.5E-26189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MMENYQGDLA DIVRATTSAA AIDGGSTPSQ QSAAPDWQFS RNSINYPPEY FGDPFSYIRD  60
PLTPNMDTPP PVSELLYNSS IVNGTGVINP DEMKRPSNIF SRMLQISPNA KLQPCDPQAA  120
APPQRGLKNP PILVSNNGGL ISPTTSALQI SSPRNTGIKR RKSQAKKVVC IPAPAPANSR  180
ATGEVVPSDL WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS ARKQVERSRT DPNMLVITYT  240
SEHNHPWPTQ RNALAGSTRS QAAKNSKDSS QKPTNQSSSA AVKLEELPEF ELPDSSSNLQ  300
HDSFFADLGE IGDDPLNLFG PHDNNDPFSF YDWPTTTTTA DDPTRKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-26162249280Disease resistance protein RRS1
5w3x_D2e-26162249280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096716.11e-121probable WRKY transcription factor 14
SwissprotQ9SA808e-76WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A4D9B3N71e-157A0A4D9B3N7_SALSN; WRKY transcription factor 22
STRINGMigut.H01307.1.p1e-113(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-76WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]