PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019964-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 367aa    MW: 42114.5 Da    PI: 10.4257
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019964-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.8e-14104190197
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                            ffkvl  s+v  s++l+lp+++     ++  e+++l+  d sgr+W+v++  ++ +++   +t+GW++F+++  Lk g+f+vF+++ +
  SMil_00019964-RA_Salv 104 FFKVL--SNVDYSKLLRLPRRYE--LTLP--ENVKLR-ADDSGRRWNVRV--QRMDDGlLCFTNGWEKFAEDAALKLGEFLVFSVVAK 182
                            99***..77888888******94..4444..555666.447*********..777777799***********************9987 PP

                            SEE..EEEEE CS
                     B3  88 sefelvvkvf 97 
                            sef   v ++
  SMil_00019964-RA_Salv 183 SEF--SVLIY 190
                            888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1898195IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-1898194IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-14102190No hitNo description
PROSITE profilePS5086313.183102193IPR003340B3 DNA binding domain
PfamPF023621.6E-11104190IPR003340B3 DNA binding domain
SMARTSM010191.8E-11104193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-5266359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-8269359IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.288270367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MRYNSGWVFI RHGQLVFKTS SKRNEKRFEK KEWDAISVIL EIKIRLWSWN KVFRIVGKEL  60
DVQAWCAADL IFSLISHLDG DEATKKPNPN PNPMTTRSNE TPSFFKVLSN VDYSKLLRLP  120
RRYELTLPEN VKLRADDSGR RWNVRVQRMD DGLLCFTNGW EKFAEDAALK LGEFLVFSVV  180
AKSEFSVLIY ETSSCKREIP NPSPSLIESN SHGGGDEIES GIKRGRGRPP LNRKRETTLE  240
IPPSRRSRVE VKSQVKGICK RNGYSKKSDP LCFERLLKTH HGSLITLPKK FVVATNMKMK  300
KQVGMKYVGN CRGGGVSHVV VAPRLQKDRI DLGEGWRKFR VANGIEFGKT YSFEFNPDDQ  360
VIYVDQK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-11B3 family protein