PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019879-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 255aa MW: 27854.2 Da PI: 11.1485

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019879-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.9	1.5e-33	24	92	2	70
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 ++k+++++++hTkv+gR+ R+R++a+caar+F+L++eLG+++ ++ti WLl++a+pai+++tgt++ ++ SMil_00019879-RA_Salv 24 PVKRSSTKDRHTKVEGRGHRIRIPATCAARVFQLTRELGHKSGGETIRWLLEKAEPAIIAATGTGTVPP 92 689*************************************************************77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.5E-27	29	94	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.748	30	84	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MKEEQPHTAD EKPAPPPLVV SQPPVKRSST KDRHTKVEGR GHRIRIPATC AARVFQLTRE 60 LGHKSGGETI RWLLEKAEPA IIAATGTGTV PPLPYRSRSA RRRWPREQGR WPWTGRRSLG 120 RNGGGRFVEA LCAAVGVDGR DGRGSSSSAA AGGSVSVDGR DGRRYNNSAV TGAFAGVNGR 180 TTENFHEGGT KGEKVAWGIG QREEKEWESV KGRQEAHDLG LIHFRINLFS ASASHISSSD 240 ISGKKFRTYC SFRFN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-36	TCP family protein