PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019815-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 706aa MW: 81023.8 Da PI: 6.5056

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019815-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.1	9.1e-21	117	206	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y++YAk++ Fsvrk ++++ ++++e+ ++tfvCs+ g + +++ + + + +++++r++C+a l++ + + g w+vt++ ++HnHel SMil_00019815-RA_Salv 117 LYCDYAKHTEFSVRKGNQERFNKTKEVRMKTFVCSCRGLTPTTHIEGRLAVYKKQSSRCNCQALLRIARVEGGPWKVTTFIKDHNHEL 204 59************************************999999899999********************************** PP FAR1 90 ap 91 +p SMil_00019815-RA_Salv 205 FP 206 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-17	117	206	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.002	418	466	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.5E-4	440	459	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.5E-4	441	468	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MVFDLNVPDG VDELEYYNSI VNDDAIDWGL NNVRNDEFSA YGFQMEEDVH VEDVNHVNVE 60 DVNHVNVEDV ESEFRHETED VANEVGHSTA VELEAVELEA KLTPGCLVDG FDEAFLLYCD 120 YAKHTEFSVR KGNQERFNKT KEVRMKTFVC SCRGLTPTTH IEGRLAVYKK QSSRCNCQAL 180 LRIARVEGGP WKVTTFIKDH NHELFPKDQT YLLRSSRHIS HTKKSMLEAL HSAGIPISHA 240 CRFMENEAGG PENAGFIHEA TETFEWLFSI FLESMNAKEP EVVFSNQCQA LMNGGLEVCT 300 NCARDGLQFS PILAFLLDSM LLRSNKVLKD LCASSGSLFD FVQKYEQIQK DWRVKERVAD 360 ALCIGTPGQF VEHNPLVMAA AKHFMRAVFV SYEFEANHSL NVSIIGNSTA DDVQQLRFVV 420 KTTTNPLRSR CVIFHRTSHE ASCSCRLWET SGILCRHIFR IYYHMNVKSI PKKYLLRRFS 480 KDAKTRIGLA IGEGNTGHTH CHILLPNSAM NSHIMCGMYE LLNDDKLDET SRQIIIHKFD 540 ELQKEIQLRL RAIRQVDTSH DDASIHNPNP LVRTPFHDPA IPVKRRFTNT RLSRHWERSK 600 KKGRKTRTAL GRELDCQATT SNNGNLVEDD HTRSTSRKSL HHELDFCFFS RLIQDPEVHW 660 DPLHNIMTMS DEVYASYLEV EPIIRGYKEH GEPMFFLLRG IYFVDE

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MVFDLNVPDG VDELEYYNSI VNDDAIDWGL NNVRNDEFSA YGFQMEEDVH VEDVNHVNVE  60
DVNHVNVEDV ESEFRHETED VANEVGHSTA VELEAVELEA KLTPGCLVDG FDEAFLLYCD  120
YAKHTEFSVR KGNQERFNKT KEVRMKTFVC SCRGLTPTTH IEGRLAVYKK QSSRCNCQAL  180
LRIARVEGGP WKVTTFIKDH NHELFPKDQT YLLRSSRHIS HTKKSMLEAL HSAGIPISHA  240
CRFMENEAGG PENAGFIHEA TETFEWLFSI FLESMNAKEP EVVFSNQCQA LMNGGLEVCT  300
NCARDGLQFS PILAFLLDSM LLRSNKVLKD LCASSGSLFD FVQKYEQIQK DWRVKERVAD  360
ALCIGTPGQF VEHNPLVMAA AKHFMRAVFV SYEFEANHSL NVSIIGNSTA DDVQQLRFVV  420
KTTTNPLRSR CVIFHRTSHE ASCSCRLWET SGILCRHIFR IYYHMNVKSI PKKYLLRRFS  480
KDAKTRIGLA IGEGNTGHTH CHILLPNSAM NSHIMCGMYE LLNDDKLDET SRQIIIHKFD  540
ELQKEIQLRL RAIRQVDTSH DDASIHNPNP LVRTPFHDPA IPVKRRFTNT RLSRHWERSK  600
KKGRKTRTAL GRELDCQATT SNNGNLVEDD HTRSTSRKSL HHELDFCFFS RLIQDPEVHW  660
DPLHNIMTMS DEVYASYLEV EPIIRGYKEH GEPMFFLLRG IYFVDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	3e-17	FAR1-related sequence 3