PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019716-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 436aa MW: 49225.1 Da PI: 6.9118

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019716-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49	1.1e-15	117	207	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +++s+v+ +l lpkkf+++h +e++ +++l e+ +++ ++ ++k++ l++GW+ F +++L + D++vF+l++ SMil_00019716-RA_Salv 117 FIKRMLKSHVSGGFWLGLPKKFCAAHL--PEQDEMVVLVGENEDRYNTRYLVEKTG----LSGGWRTFSIEHKLLAEDVLVFQLIEPC 198 899*********************5..456779***********777776....***********************988 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v+++r+ SMil_00019716-RA_Salv 199 KF--KVHIVRR 207 88..8888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.29E-21	112	207	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.3E-19	112	207	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.15E-24	115	206	No hit	No description
PROSITE profile	PS50863	10.983	117	208	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-13	117	207	IPR003340	B3 DNA binding domain
SMART	SM01019	8.7E-19	117	208	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MVVSPVHDSG GTITCKKLKR KSATPEESKA KQRSVIWEMK RRLVKQRLMD LSYADENTFI 60 FLLEQEESIT VETPLVHTPQ ESPPTNDVNS SAGVSNSTME RAQEVQANLS PKSSPSFIKR 120 MLKSHVSGGF WLGLPKKFCA AHLPEQDEMV VLVGENEDRY NTRYLVEKTG LSGGWRTFSI 180 EHKLLAEDVL VFQLIEPCKF KVHIVRRRSV TDIDGARTLQ NLRGSVYPSE AAPNQTGDDN 240 DHASSETMDG IKFSESFLSF KDVKSFKDFS IHVDGLMIDA EMPLHLRRKY YELCRSQNTF 300 LHENLMKGLN TKLAAGMISE TSNIADAIRA AKPSAGAADH LRNWDTALKA FEELGMVVGF 360 LRARIDKLLT LSRQVEDIIE QKRCERAEAK EETRRLNLKL LDVKIQIQNL DAEIDGLIAK 420 NEEQVYVFRE AAAAPW

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MVVSPVHDSG GTITCKKLKR KSATPEESKA KQRSVIWEMK RRLVKQRLMD LSYADENTFI  60
FLLEQEESIT VETPLVHTPQ ESPPTNDVNS SAGVSNSTME RAQEVQANLS PKSSPSFIKR  120
MLKSHVSGGF WLGLPKKFCA AHLPEQDEMV VLVGENEDRY NTRYLVEKTG LSGGWRTFSI  180
EHKLLAEDVL VFQLIEPCKF KVHIVRRRSV TDIDGARTLQ NLRGSVYPSE AAPNQTGDDN  240
DHASSETMDG IKFSESFLSF KDVKSFKDFS IHVDGLMIDA EMPLHLRRKY YELCRSQNTF  300
LHENLMKGLN TKLAAGMISE TSNIADAIRA AKPSAGAADH LRNWDTALKA FEELGMVVGF  360
LRARIDKLLT LSRQVEDIIE QKRCERAEAK EETRRLNLKL LDVKIQIQNL DAEIDGLIAK  420
NEEQVYVFRE AAAAPW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092580.1	1e-158	B3 domain-containing protein Os01g0234100 isoform X1
TrEMBL	A0A4D9A346	1e-161	A0A4D9A346_SALSN; Uncharacterized protein
STRING	Migut.N01194.1.p	1e-128	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-34	B3 family protein