PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019582-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 479aa MW: 54627.5 Da PI: 7.2109

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019582-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.2	2e-16	64	134	1	73
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 +fY +Y+k++GFs+r+sks++ + g+ ++r f+Cs egk++++k++ ++ r+etr gC+ak+kv+ +++ SMil_00019582-RA_Salv 64 EFYLKYSKRMGFSIRRSKSHND-KFGKLVDRIFCCSAEGKKTNDKRE-IYVKKARPETRFGCQAKMKVSSRET 134 6**************99988.6667************9999.99999*************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-12	64	135	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MDSGCTSSRR LSFEDINERN HDCDISDVVD DNNMNQSVNF MSLNNEEDKP KIGMSFDTED 60 DAYEFYLKYS KRMGFSIRRS KSHNDKFGKL VDRIFCCSAE GKKTNDKREI YVKKARPETR 120 FGCQAKMKVS SRETGMLLED RRYEEVKADF RANTSLPCLS YPVEILKHAV SIYTPEVYKI 180 FEQEWYKSHD SSLECFENGE LLASLKVFGM HNIKKIPNEY ILKRWTRKAK IGFSGDANIN 240 MSEMDPKLLQ NIRYKELCGL YVQLVTKASE NEDTYRIVKD GILKMFDMVD GDGELEQRTN 300 CRNLSLNADE LQITLGAKGI KSKNKTTSSK RLKSGLEKSK GKRKASRKKG QPLTNSTTSP 360 PLLSTNLEGV EENMTTISSV SDIPYQRLNT IEEFGTSSNQ QNFGGMPFSM NMTNLLLAQQ 420 PLNFDYLGAN NLQERNSLNK EAYLGDVNHG ERYESPASDH RVSHSTLEEL NPENVSHLG

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MDSGCTSSRR LSFEDINERN HDCDISDVVD DNNMNQSVNF MSLNNEEDKP KIGMSFDTED  60
DAYEFYLKYS KRMGFSIRRS KSHNDKFGKL VDRIFCCSAE GKKTNDKREI YVKKARPETR  120
FGCQAKMKVS SRETGMLLED RRYEEVKADF RANTSLPCLS YPVEILKHAV SIYTPEVYKI  180
FEQEWYKSHD SSLECFENGE LLASLKVFGM HNIKKIPNEY ILKRWTRKAK IGFSGDANIN  240
MSEMDPKLLQ NIRYKELCGL YVQLVTKASE NEDTYRIVKD GILKMFDMVD GDGELEQRTN  300
CRNLSLNADE LQITLGAKGI KSKNKTTSSK RLKSGLEKSK GKRKASRKKG QPLTNSTTSP  360
PLLSTNLEGV EENMTTISSV SDIPYQRLNT IEEFGTSSNQ QNFGGMPFSM NMTNLLLAQQ  420
PLNFDYLGAN NLQERNSLNK EAYLGDVNHG ERYESPASDH RVSHSTLEEL NPENVSHLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	337	348	KSKGKRKASRKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15234	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-11	FAR1 family protein