PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00019502-RA_Salv | ||||||||
Common Name | WRKY16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 321aa MW: 35934.8 Da PI: 4.7591 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.2 | 4.1e-29 | 110 | 171 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgynWrKYGqK++ g+++pr+YYrCt++ gC ++k+v+r++edp+v+e++Y+g+H ++ SMil_00019502-RA_Salv 110 LDDGYNWRKYGQKDILGATHPRAYYRCTHRntqGCLATKQVQRADEDPTVFEVIYRGKHSCR 171 59***************************98889*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.606 | 105 | 169 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.5E-28 | 108 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-25 | 109 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-40 | 110 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 111 | 171 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MEKVGVSEKK TVITVLTEGK KLANELKRQL HPTKNPTEAC DVLVESILSS YENAITLLAL 60 IENGGFEPSI SIEGSPRSEG SDHNSKKRKT MPRWSEHVRI SSGAGGEAQL DDGYNWRKYG 120 QKDILGATHP RAYYRCTHRN TQGCLATKQV QRADEDPTVF EVIYRGKHSC RQERLRQSKE 180 RKEQESLACS TLVSNGPSLI KTEKRDVIDS KDEEDLPSFS FPSTPIECEN VEPQFFSEPN 240 RFITTSYSPS SFLSSATSES YFSPSPCLVN DFGFGNSLQS SESDFGEIIS NPTPITDFSL 300 GDLDISIDEV DFESHFLDEF F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-21 | 110 | 171 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823139 | 0.0 | KM823139.1 Salvia miltiorrhiza WRKY protein (WRKY16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093555.1 | 1e-140 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A0D5Y996 | 0.0 | A0A0D5Y996_SALMI; WRKY protein | ||||
STRING | Migut.B01847.1.p | 1e-119 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5553 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 9e-46 | WRKY family protein |