PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00019417-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 26620.9 Da PI: 8.2137 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.5e-19 | 97 | 151 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+ +++++ +++++LA++l+L rqV vWFqNrRa+ k SMil_00019417-RA_Salv 97 RKKLRLTKTQSALLEESFKHHSTLNPKQKQDLAMELKLRPRQVEVWFQNRRARTK 151 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 120.1 | 1.2e-38 | 97 | 184 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+k q++lLEesF+++++L+p++K++la eL+l+prqv+vWFqnrRARtk+kq+E+++e Lk+++++l++en+rL+ke ++L+ SMil_00019417-RA_Salv 97 RKKLRLTKTQSALLEESFKHHSTLNPKQKQDLAMELKLRPRQVEVWFQNRRARTKLKQTEVECELLKKCCETLTDENRRLQKELHDLK 184 69**********************************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.89E-18 | 85 | 154 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-17 | 90 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.925 | 93 | 153 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-15 | 95 | 157 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-16 | 97 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.55E-15 | 97 | 154 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 128 | 151 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.6E-17 | 153 | 193 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.4E-7 | 153 | 184 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGVDDDSCQT RLVLGLGIRS SAENSKKSLS SSPSLTLTLF GETINKRVDV CSNDSAASSL 60 SNASVKRERE VGSEEVDETE RVSSRGSDED DDGSNGRKKL RLTKTQSALL EESFKHHSTL 120 NPKQKQDLAM ELKLRPRQVE VWFQNRRART KLKQTEVECE LLKKCCETLT DENRRLQKEL 180 HDLKLAPPLY MKLPAAATLT ICPTCERFSS SGGGAAENAT KSPFAKPHFY NHFTNPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 153 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099420.1 | 1e-111 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 3e-79 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2G9H1F9 | 1e-113 | A0A2G9H1F9_9LAMI; Transcription factor HEX | ||||
STRING | XP_009338969.1 | 1e-100 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-56 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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