PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019414-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 239aa    MW: 27203.5 Da    PI: 7.6907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019414-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00041481881055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            rrR +++ +++ +L++l+ +      +K + a++L +A   I+ Lq
  SMil_00019414-RA_Salv 148 RRRSQKLTDKITTLQKLVSPY-----GKTDTASVLLEASVSIQALQ 188
                            9******************99.....8***********99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.432138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-6146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-7148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MKNAILSHFS SYSYTNNGRN EVFTETPPIN SHLFPNDDSL CFYGDFSSDH AQIDPQNTVD  60
SILVTEYTST SHMPVQEHAF YQPWNTTFLQ QTHNEVGVVQ DARKRPAEAA TCSITNSGTN  120
EKERKKKRRT RLQGKLPKIH QEKEPTSRRR SQKLTDKITT LQKLVSPYGK TDTASVLLEA  180
SVSIQALQDQ IEHMFHIISG EQTTNVTGEK RSDLQIRGLC LLPSVVLEEL DRRLPQYLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124128KKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8ZPF72e-75A0A4D8ZPF7_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1544456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.11e-16bHLH family protein