PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019332-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 313aa    MW: 34741 Da    PI: 7.2737
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019332-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-1256100147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  SMil_00019332-RA_Salv  56 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 100
                            789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.46E-1650106IPR009057Homeodomain-like
PROSITE profilePS5129413.75851105IPR017930Myb domain
TIGRFAMsTIGR015572.3E-1854103IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.2E-654106IPR009057Homeodomain-like
SMARTSM007179.6E-1055103IPR001005SANT/Myb domain
PfamPF002496.0E-1056100IPR001005SANT/Myb domain
CDDcd001671.27E-758101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MFSLNTNQPE GFFSDRNGMA LPNIGLFSSP AAGHATSPAE DPNKKIRKPY TITKSRESWT  60
EPEHDKFLEA LQLFDRDWKK IEAFIGSKTV IQIRSHAQKY FLKVQKSGTN EHLPPPRPKR  120
KAAHPYPQKA SKIAPVLSQE RLSFQGSAAV PDNGFGRRPD LSAILRNETA ASIPGWTEKP  180
LQNTNFSHAT GGDARYDGQT MPYVCSSGSD DSTTRTRPTG DITAVLPDFG QVYSFIGSVF  240
DPNVTGHLQK LKKMDPIDIE TVLLLMRNLS INLASRDFED HRRLLSSYEI DPEKDDAFDV  300
TDSILCSQSE GAG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076101.11e-170protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-103RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A4D9AUS60.0A0A4D9AUS6_SALSN; Uncharacterized protein
STRINGMigut.F00285.1.p1e-149(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.26e-89MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]