PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018864-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 297aa    MW: 33924.1 Da    PI: 7.8315
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018864-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.5e-194693148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd ll+++v  +G g+W++ a+  g++Rt+k+c++rw++yl
  SMil_00018864-RA_Salv 46 RGPWTLEEDNLLIQYVSSHGEGRWNSLAKFAGLKRTGKSCRLRWLNYL 93
                           89********************************************97 PP
2Myb_DNA-binding54.23.4e-1799142146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg++++ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  SMil_00018864-RA_Salv  99 RGNFSPHEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 142
                            89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8744197IPR017930Myb domain
SuperFamilySSF466895.47E-3244140IPR009057Homeodomain-like
SMARTSM007171.3E-164595IPR001005SANT/Myb domain
PfamPF002494.9E-184693IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2447100IPR009057Homeodomain-like
CDDcd001672.38E-124893No hitNo description
PROSITE profilePS5129420.32198148IPR017930Myb domain
SMARTSM007175.3E-1698146IPR001005SANT/Myb domain
PfamPF002499.2E-1699142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-24101147IPR009057Homeodomain-like
CDDcd001673.08E-11101142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
LSWGFSCAFN QKHLIITTTV STYFGIMSSN SKTNINIYEC ESELRRGPWT LEEDNLLIQY  60
VSSHGEGRWN SLAKFAGLKR TGKSCRLRWL NYLKPDIKRG NFSPHEQLLI LELHSKWGNR  120
WSKIAQHLPG RTDNEIKNYW RTRVQKQARQ LKVDSNSKKF LEAIRTFWMP RLMEKMEQNS  180
PSTASSPSSS IAAAPSSPAI SQLAPPDSLC PNPVNNSNSD GNNYDIFVSS SSPSVNLTAV  240
KNQTEIPIEE SYYNVGFPGC YDDMQVQGIS PPECHVAEID WFGEDFWNTD ELWQFRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-264314824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593850.0KF059385.1 Salvia miltiorrhiza MYB-related transcription factor (MYB31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070788.11e-119transcription factor MYB62
SwissprotQ9C9G71e-87MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A059PRJ00.0A0A059PRJ0_SALMI; MYB-related transcription factor
STRINGSolyc05g009230.1.11e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-85myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]