PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00017718-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 220aa MW: 24878.9 Da PI: 9.4695 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 53.5 | 4.9e-17 | 156 | 201 | 2 | 47 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv 47 dDgy+WrKYGqK++ g+++prsYYrCt+++ + + ++++++k+ SMil_00017718-RA_Salv 156 DDGYSWRKYGQKDILGAKYPRSYYRCTYRQGRNVGQRSKCRDQTKM 201 8***************************976655555555544444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-16 | 148 | 215 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-14 | 154 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.3E-13 | 155 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-14 | 156 | 214 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.398 | 156 | 217 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
LNEHRFVEIG PPSFPQESHS KSKSKKMERV STWDLKVLTD ELAQGMEKAM QLRFHLCSTS 60 HSEAEDLILQ RIISTFEKAL CILKCGGHVG VAHVGAQAAA PESSISADGS SRSDDTNKNI 120 KEYQEQGYAS KKRKLQPTWT EQVKVNSENG LEGPGDDGYS WRKYGQKDIL GAKYPRSYYR 180 CTYRQGRNVG QRSKCRDQTK MPPYLRSHTK EHTHANSSIM |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823134 | 0.0 | KM823134.1 Salvia miltiorrhiza WRKY protein (WRKY11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101023.1 | 5e-72 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A0D5Y991 | 1e-116 | A0A0D5Y991_SALMI; WRKY protein | ||||
STRING | Migut.E01246.1.p | 9e-61 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1843 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 3e-30 | WRKY family protein |