PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017593-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 222aa    MW: 24431.6 Da    PI: 9.2236
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017593-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.7e-18154188135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C +C++ kTp+WR gp g+ktLCnaCG++y++ +l
  SMil_00017593-RA_Salv 154 CLHCQSDKTPQWRAGPMGPKTLCNACGVRYKSGRL 188
                            99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.123148184IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-17148202IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14149185IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.81E-15149211No hitNo description
CDDcd002021.14E-12154201No hitNo description
PfamPF003209.2E-16154188IPR000679Zinc finger, GATA-type
PROSITE patternPS003440154179IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MALCCHALEP SGRWVSSGAG TQRAWFHGIQ FQNYPEFAEE ELEWLSNKDE FPAVETCFGI  60
LSDNPELLVS HHSPSSVLEN SSSSGDVSGG GSASASCCGS LKVPVRPRSN GRRRRRRVDY  120
GELPPDQAMW SGQVTWMLPR ISAAGGGGRM GRRCLHCQSD KTPQWRAGPM GPKTLCNACG  180
VRYKSGRLLP EYRPANSPTF SSKLHSNSHR RVVEMRRQTL LG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107116RSNGRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091388.15e-79GATA transcription factor 1
SwissprotQ8LAU92e-44GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A4D9BHR83e-90A0A4D9BHR8_SALSN; Uncharacterized protein
STRINGXP_009618081.11e-69(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-36GATA transcription factor 1