PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017492-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 380aa MW: 39837.7 Da PI: 8.2239

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017492-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.7	1.7e-41	92	235	2	129
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + SMil_00017492-RA_Salv 92 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVP 179 789******************************************************************9998777777777755555 PP TCP 89 ...............kaaksaakskksqksaasalnlakesrakarararertrek 129 ++++ a+ + +s++s+a+ ln++++ + + ++a+++ re+ SMil_00017492-RA_Salv 180 sqlrstyfnpsyamsSQRRGAMFGLSSESSSATLLNFQASNLNPSLMQAKQEMREN 235 77766777777777633333334445555555555555544444444444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-43	96	262	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.923	98	152	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MEGGDDHLHL HHHQHHHHHN HQNSRPNFPF QLLEKKEDES TSSSYPSLAI STADASNPNN 60 HNSSTSASAS ASAGSLQIVT AAAAAEASKK PPPKRTSTKD RHTKVDGRGR RIRMPALCAA 120 RVFQLTRELG HKSDGETIEW LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSMSVPS 180 QLRSTYFNPS YAMSSQRRGA MFGLSSESSS ATLLNFQASN LNPSLMQAKQ EMRENSLDLS 240 ESADQDGLGR KRRAEHELQQ HHSGATCSNP APAPWHPATP PSRPISGCNA AAAAALYRGS 300 VSSGLHFMNF PAPIALLPSQ QLGSGGGGGG GGNGMGEGQL GMLAGLNQYR GGGGAGMSDS 360 QASGSHGGGD DRHDATSHHS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MEGGDDHLHL HHHQHHHHHN HQNSRPNFPF QLLEKKEDES TSSSYPSLAI STADASNPNN  60
HNSSTSASAS ASAGSLQIVT AAAAAEASKK PPPKRTSTKD RHTKVDGRGR RIRMPALCAA  120
RVFQLTRELG HKSDGETIEW LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSMSVPS  180
QLRSTYFNPS YAMSSQRRGA MFGLSSESSS ATLLNFQASN LNPSLMQAKQ EMRENSLDLS  240
ESADQDGLGR KRRAEHELQQ HHSGATCSNP APAPWHPATP PSRPISGCNA AAAAALYRGS  300
VSSGLHFMNF PAPIALLPSQ QLGSGGGGGG GGNGMGEGQL GMLAGLNQYR GGGGAGMSDS  360
QASGSHGGGD DRHDATSHHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016472329.1	1e-135	PREDICTED: transcription factor TCP14-like
TrEMBL	A0A1S4A6U8	1e-133	A0A1S4A6U8_TOBAC; transcription factor TCP14-like
STRING	XP_009794435.1	1e-134	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2882	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-43	TCP family protein