PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017161-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 200aa    MW: 22330.1 Da    PI: 10.2468
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017161-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.63.9e-33501752115
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasns 85 
                            ++k+ +++++hTkv+ R+RR+R++++c ar+F+L++eLG+++d++ti WLlqqa+ a+ ++  ts++sa+++    + +sssss s  
  SMil_00017161-RA_Salv  50 PPKRLSTKDRHTKVDDRGRRIRMPVTCLARIFQLTRELGHKSDGETIKWLLQQAELAVVAAICTSTISANFAsfniSIWSSSSSLSV- 136
                            7899****************************************************************9887555533344443332. PP

                    TCP  86 ssg..........kaaksaakskksqksaasalnlak.esr 115
                              +          +   +a++++ s ++++s l +++ e r
  SMil_00017161-RA_Salv 137 --PshlrsldyfsQGFVAAPPPQLSFDESNSLLGFSAgEGR 175
                            ..133356677744444444777777777777777765444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3155152IPR005333Transcription factor, TCP
PROSITE profilePS5136923.00656110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MWRQDRGAAR QVEAHDKEIE KERCGGATRQ RHETARQRRK TVEKASRKPP PKRLSTKDRH  60
TKVDDRGRRI RMPVTCLARI FQLTRELGHK SDGETIKWLL QQAELAVVAA ICTSTISANF  120
ASFNISIWSS SSSLSVPSHL RSLDYFSQGF VAAPPPQLSF DESNSLLGFS AGEGRSGRKL  180
HAAVEFGCDS GDQFSRGECD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12838RQRHETARQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071008.12e-49transcription factor TCP15
SwissprotQ93Z009e-37TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A2G9I2U93e-47A0A2G9I2U9_9LAMI; Uncharacterized protein
TrEMBLA0A2I4EEA31e-46A0A2I4EEA3_JUGRE; transcription factor TCP15-like
TrEMBLA0A2R6RFF42e-47A0A2R6RFF4_ACTCH; Transcription factor like
STRINGMigut.L01307.1.p6e-47(Erythranthe guttata)
STRINGGSMUA_Achr7P20990_0016e-47(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.15e-31TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]