PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00017109-RA_Salv | ||||||||
Common Name | WRKY50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 223aa MW: 25371.2 Da PI: 6.4032 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.4 | 2.3e-31 | 80 | 138 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ SMil_00017109-RA_Salv 80 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSSADPNMLIVTYSCEHNHP 138 69*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-32 | 73 | 140 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.55E-27 | 78 | 140 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-37 | 79 | 139 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.524 | 80 | 140 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.2E-27 | 81 | 138 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
LAAQKTMNSN RFSSSHFARE SENSSSPENS EDSPTSAMAK DLKITSKLRR SAVRKKVMSV 60 PIKDIERLRL KGDHVSAPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS 120 SADPNMLIVT YSCEHNHPPP SSRNIHHRPP PPAMSVSEEE LEEEEEEEDE YDEEGEKPRD 180 LVHNQSQELI LDNRFEGNLI CGGEFGWLTD FESTSCMILR VRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-22 | 55 | 141 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-22 | 55 | 141 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823173 | 0.0 | KM823173.1 Salvia miltiorrhiza WRKY protein (WRKY50) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022847989.1 | 2e-70 | probable WRKY transcription factor 65 isoform X2 | ||||
TrEMBL | A0A0D5YA20 | 1e-131 | A0A0D5YA20_SALMI; WRKY protein | ||||
STRING | XP_009595576.1 | 1e-60 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6475 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 8e-46 | WRKY DNA-binding protein 65 |