PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016986-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 400aa    MW: 42824.8 Da    PI: 8.9214
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016986-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64e-20193242255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  SMil_00016986-RA_Salv 193 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 242
                            8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-33192251IPR001471AP2/ERF domain
CDDcd000187.96E-21193252No hitNo description
SMARTSM003803.8E-37193256IPR001471AP2/ERF domain
PfamPF008478.7E-14193242IPR001471AP2/ERF domain
PROSITE profilePS5103225.62193250IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22193251IPR016177DNA-binding domain
PRINTSPR003671.4E-11194205IPR001471AP2/ERF domain
PRINTSPR003671.4E-11216232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
LRYMCLINKV ANRQGSGDFA RIRPTSNTSS TASATAAATA NVQTNPYFHA QQQQPDYLLS  60
AVVSPPPAPS GHGEFGEMSA MVTALTHVVS GQRQAPSFGG SGSFNPSTVD SPTSAYSSSS  120
SGSWAGQKRR RHQDDSSDRV YRGLGESSSS VKAEPECEMS TAAPTTTAAA AEPPRQPESS  180
AAPPEEAGER RRKYRGVRQR PWGKWAAEIR DPHKAARVWL GTFETAEAAA RAYDEAALRF  240
RGNRAKLNFP EHVRVLPPPQ PSQSTQIAAA VRPAAAPPPF FQTDGRDYWE YSQLLQSSGD  300
LQAPQQSTAS LFDQMFYASS LAGLYTSSSS SSLQSQHSSF FSSQTSQYPM LFSSGQTIHF  360
TPQEDNQQTR GGGRGAGDAS GASLPAPPWT SSHYPSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23192253466ATERF1
3gcc_A2e-23192253466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193ERRRKY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101230.11e-123ethylene-responsive transcription factor ABR1-like
TrEMBLA0A4D9A6U81e-142A0A4D9A6U8_SALSN; EREBP-like factor
STRINGPGSC0003DMT4000163061e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-29ethylene response factor 110