PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016619-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | WRKY | ||||||||
Protein Properties | Length: 236aa MW: 26556.6 Da PI: 9.6746 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.6e-30 | 101 | 160 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed+++v+ tYegeHnh+ SMil_00016619-RA_Salv 101 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVEDQSIVIATYEGEHNHP 160 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-30 | 88 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.9 | 96 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-26 | 97 | 162 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-33 | 101 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-24 | 102 | 160 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEFSSLLDTS LNLNAKPPPL PPPPPDYAKQ EGESQSFTAF GRNEEWAKDQ LAEYRSKKRK 60 SNDNVESSSS DEDSSNKTLI KPNIISHSHV RTQASDTSLI VKDGYQWRKY GQKVTRDNPS 120 PRAYFKCSFA PTCPVKKKVQ RSVEDQSIVI ATYEGEHNHP HPSKVEAPPN RSSPSLSPLA 180 PRITLDLTNS TPSSDDLRGK LKCSTASDRC STYKRSHFQS SFGSCHIRKF LQQNKW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-20 | 100 | 162 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM823132 | 0.0 | KM823132.1 Salvia miltiorrhiza WRKY protein (WRKY9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073326.1 | 7e-59 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 3e-45 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A0D5YA01 | 1e-122 | A0A0D5YA01_SALMI; WRKY protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-44 | WRKY DNA-binding protein 40 |