PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00016591-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 27340.4 Da PI: 4.9872 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.3e-19 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ F+ ++++ +++ eLAkklgL+ rqV +WFqNrRa+ k SMil_00016591-RA_Salv 58 KKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSK 111 56789***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 126.2 | 1.5e-40 | 57 | 148 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl++eqv++LE+sF e+kLep+rK+ela++Lglqprqva+WFqnrRAR ktk lE++y +Lk++yd+lk++ ++L +++e+L+ SMil_00016591-RA_Salv 57 EKKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSKTKVLEREYGSLKSCYDKLKADYDTLFSDNEKLK 144 69************************************************************************************** PP HD-ZIP_I/II 89 eelk 92 +e++ SMil_00016591-RA_Salv 145 NEVR 148 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.74E-19 | 42 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 53 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 56 | 117 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-16 | 58 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.02E-16 | 58 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 59 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.6E-6 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-6 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-15 | 113 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
LLNDERIPSD ALWIPNSSPS LHAMVSFEQS RGERSNRSRQ SDCDDEDSDS CFHRPPEKKR 60 RLTAEQVQFL EKSFAVENKL EPDRKNELAK KLGLQPRQVA IWFQNRRARS KTKVLEREYG 120 SLKSCYDKLK ADYDTLFSDN EKLKNEVRLL SGKLLQKGND EISPLDAAPC KQEDASSHSS 180 HVLEASDFEQ GDEDDECLVQ RLCLPKLEAE YYDDHLQPNS CNLGFPVQNQ GTWFWQC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071034.1 | 1e-87 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A4D9APJ0 | 1e-132 | A0A4D9APJ0_SALSN; Homeobox-leucine zipper protein | ||||
STRING | XP_009766848.1 | 8e-70 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 7e-42 | homeobox 1 |