PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016572-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 279aa    MW: 30563.1 Da    PI: 9.6129
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016572-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-181759345
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           i+n+   + +fskRr g++KKA+ELS+LC+a+v vi+fs+t++
  SMil_00016572-RA_Salv 17 IQNQDDLYASFSKRRLGLFKKASELSTLCGADVGVIVFSPTDN 59
                           788889999*******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.32767IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-24766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-24879IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-13929IPR002100Transcription factor, MADS-box
PfamPF003194.0E-211763IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAARQTRGRQ RIPMRLIQNQ DDLYASFSKR RLGLFKKASE LSTLCGADVG VIVFSPTDNP  60
FSFFSPTMDS VLDRYLHPDR PTRHSARAID THARARIDAL NKRLDDLLDQ KLRLRDYQRR  120
LDEADQARQK AWWEETAVDA LDKEQVRQWT AWFGNFKARV EDKVARLRNG GSSSSAAAAD  180
PFYRRVLAPQ YRYYVSPEGG GGSGGGGGSG QNVFPAAGHV DGSGGGEGGR HLCPNLVPRS  240
QGIPSTNLCF PLASGVVNIP SASPAAGEEE AVAFNREGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082263.14e-76MADS-box transcription factor 17-like
RefseqXP_012838634.18e-75PREDICTED: uncharacterized protein LOC105959133
TrEMBLA0A022S1J25e-76A0A022S1J2_ERYGU; Uncharacterized protein
STRINGMigut.K00930.1.p1e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-25AGAMOUS-like 61