PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016341-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 780aa    MW: 84524.1 Da    PI: 6.3081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016341-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.84.1e-32378434259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh 
  SMil_00016341-RA_Salv 378 DDGYNWRKYGQKHVKGSEYPRSYYKCTHPSCPVKKKVERSQ-EGHITEIIYKGAHNHA 434
                            8****************************************.***************7 PP
2WRKY1048e-33587645159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  SMil_00016341-RA_Salv 587 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 645
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.422372436IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-28375436IPR003657WRKY domain
SuperFamilySSF1182903.92E-25376436IPR003657WRKY domain
SMARTSM007741.6E-35377435IPR003657WRKY domain
PfamPF031061.7E-24378433IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-37572647IPR003657WRKY domain
SuperFamilySSF1182901.57E-28579647IPR003657WRKY domain
PROSITE profilePS5081138.733582647IPR003657WRKY domain
SMARTSM007746.6E-38587646IPR003657WRKY domain
PfamPF031065.5E-25588645IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MPMGGFDDHV AIMGEWMPPS PNPGAFFLSM MNDDVGARLA VESDSGNRRG PEQQGTSRNG  60
DQKDQSEASF GDDETNNCKA AGEPKLSSRG GLMERIAARA GFNAPRLNTE NIRPSDLSKK  120
PEVRSPYLTI PPGLSPTTLL DSPVFLSNSL ILEYDAALHL CDSYLFESLS LCTIQMTVGS  180
LQRRMVFSLL LLPPVVCEHL ADVASISYSL SYAKRSSNPY QDEKVLPSPT TGKFSFASSG  240
DYRDSTLMIG DSDKGKENNF EDINASSFAF KPITESASFP YLNATNKTFP SAGFTVHSNT  300
SLQRQSIEPT KSHLANNSTL FQEASFSKSD LGNNGSSNLL QQTHSSGAMA HSPPFDEQND  360
DGDQRSSGDP NSGGSTADDG YNWRKYGQKH VKGSEYPRSY YKCTHPSCPV KKKVERSQEG  420
HITEIIYKGA HNHAKPPPNR RSTLGSSNAL GDMQLDAEEP GTGDPIWSAV QNGNAAGGWK  480
PDNLETTPSA LPGQEYNNGG TTAPQAQNGT TYESVDGVDG CSTFSNEEEE DDRATRGSMS  540
LGYDGEGDES ESKRRKLETY APEMGGASRP IREPRVVVQT TSEVDILDDG YRWRKYGQKV  600
VKGNPNPRSY YKCTSAGCNV RKHVERASHD LKSVITTYEG KHNHDVPAAR NSGAHVNSGG  660
QNTHPPQQAH AASGNVHRPE PSHLRGSTAW FERPALGSFG LGPGHGFGYR MDQAGLGMGP  720
NQGKLGVHPY LGQQNRAVKE MCYMLPKGEP KVEPVTDAGG LNSSNASSVY EQLMSRLPHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36378648878Probable WRKY transcription factor 4
2lex_A2e-36378648878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231650.0KM823165.1 Salvia miltiorrhiza WRKY protein (WRKY42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095658.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-132WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0D5YAF40.0A0A0D5YAF4_SALMI; WRKY protein
STRINGPGSC0003DMT4000569520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-131WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]