PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016215-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 249aa    MW: 29236.8 Da    PI: 8.3727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016215-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-18449147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  SMil_00016215-RA_Salv  4 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                           899*****************************.***********996 PP
2Myb_DNA-binding57.72.7e-185699146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           r ++T+eE+e+l+ +++ +G++ W+ Iar ++ gRt++ +k++w+ 
  SMil_00016215-RA_Salv 56 RSPFTEEEEERLLACHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                           789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.962150IPR017930Myb domain
SMARTSM007172.5E-15352IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-30497IPR009057Homeodomain-like
PfamPF002499.0E-18449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-27557IPR009057Homeodomain-like
CDDcd001678.52E-14748No hitNo description
PROSITE profilePS5129427.21951105IPR017930Myb domain
SMARTSM007177.8E-1655103IPR001005SANT/Myb domain
PfamPF002494.2E-155698IPR001005SANT/Myb domain
CDDcd001671.01E-115898No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2158104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MCSRGHWRPA EDEKLRELVE RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEERLLAC HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARKCRERSK IYEKRASQPF  120
ISQSKLHNAN ILSVKGKTLS FSPLMDTFPQ TFDSCPFRYN LQIADHQYCD SPITRMKIDE  180
ERSKGVEFYN FLQINTDSNR SEVIDYARKE KQDDKDEEEE VDQKAAPFQR NEASSSPPFI  240
DFLSLGNSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3341057108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022885385.11e-105transcription factor MYB52-like
SwissprotQ6R0C45e-87MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A4D8YPK11e-139A0A4D8YPK1_SALSN; Myb proto-oncogene protein, plant
STRINGXP_006478100.11e-102(Citrus sinensis)
STRINGXP_006441364.11e-102(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-83myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]