PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00016032-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 347aa MW: 37750.2 Da PI: 8.3736

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00016032-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3e-32	164	217	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ SMil_00016032-RA_Salv 164 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 217 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-15	161	217	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	162	217	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-24	164	217	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-7	165	216	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009887	Biological Process	organ morphogenesis
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0009956	Biological Process	radial pattern formation
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010158	Biological Process	abaxial cell fate specification
GO:0010229	Biological Process	inflorescence development
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MPLEGIFMES NSKAAPDLSL QISPPNATPP TICNTMSDLA KSSGGEAQRG GGIRYPQNPT 60 TASRFPSRAS RCTRTGPSHS CRTTPRTKDV LLSNALPVFA LLAGSTTTMP FLGNASSSSS 120 LPPYRTARYN GLTPSYHHDP SSPHGIIRSR FLPRLPAKRS MRAPRMRWTS TLHARFVHAV 180 ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKPAASSDG SGEDDLGGDV 240 AGLRLFMDQR GLTSDESSPQ DAEYPSTAAS TLWSNSSREC WAQNNNVGES HGLVRSSSFP 300 SDSNACPLIE ENESSCPKSY EILVNENYKS PSLEFTLGLN RPNWDEK

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MPLEGIFMES NSKAAPDLSL QISPPNATPP TICNTMSDLA KSSGGEAQRG GGIRYPQNPT  60
TASRFPSRAS RCTRTGPSHS CRTTPRTKDV LLSNALPVFA LLAGSTTTMP FLGNASSSSS  120
LPPYRTARYN GLTPSYHHDP SSPHGIIRSR FLPRLPAKRS MRAPRMRWTS TLHARFVHAV  180
ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKPAASSDG SGEDDLGGDV  240
AGLRLFMDQR GLTSDESSPQ DAEYPSTAAS TLWSNSSREC WAQNNNVGES HGLVRSSSFP  300
SDSNACPLIE ENESSCPKSY EILVNENYKS PSLEFTLGLN RPNWDEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-17	165	219	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	165	219	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	165	219	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	165	219	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB220968	1e-54	AB220968.1 Ipomoea nil FE mRNA for KANADI-like transcription factor FEATHERED, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099922.1	9e-92	transcription repressor KAN1-like isoform X3
Refseq	XP_011099923.1	3e-93	transcription repressor KAN1-like isoform X5
Swissprot	Q93WJ9	4e-67	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A4D8ZNW1	1e-131	A0A4D8ZNW1_SALSN; Uncharacterized protein
STRING	Solyc11g011770.1.1	2e-85	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2468	23	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	3e-60	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]