PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015954-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 22100.6 Da PI: 5.2829 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.1 | 1.8e-36 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ e ++wyf+s+r + ++r+ sgyW+ g SMil_00015954-RA_Salv 8 MPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLHGKAMCEGNKWYFYSRRTT-------QSRVGGSGYWQPIGV 87 79*************************999.99**************977677899******9865.......679999********* PP NAM 89 dkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 +++++s +g+ vg+kk +fy g + ++g+kt+W+mheyrl SMil_00015954-RA_Salv 88 EEAIYS-GGQRVGMKKCNAFYVGqQPSQGVKTNWIMHEYRL 127 ******.99************88355689**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-49 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.307 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-22 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGDNNLNMPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLHGKAMCE 60 GNKWYFYSRR TTQSRVGGSG YWQPIGVEEA IYSGGQRVGM KKCNAFYVGQ QPSQGVKTNW 120 IMHEYRLSDS TSSNRSSSRR RSSKIDYSKW VVCRVYERNC DSDDDDGTQL SCLDEVFLSL 180 DDLDEISLPN YS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-45 | 4 | 162 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-45 | 4 | 162 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-45 | 4 | 162 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-45 | 4 | 162 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-45 | 4 | 162 | 16 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-45 | 4 | 162 | 16 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-45 | 4 | 162 | 16 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-45 | 4 | 162 | 16 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-45 | 4 | 162 | 16 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-45 | 4 | 162 | 16 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-45 | 4 | 162 | 16 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-45 | 4 | 162 | 16 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-45 | 4 | 162 | 13 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-45 | 4 | 162 | 13 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106335.1 | 1e-101 | NAC domain-containing protein 104-like | ||||
Refseq | XP_027159802.1 | 1e-101 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 9e-79 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A068TMB6 | 1e-100 | A0A068TMB6_COFCA; Uncharacterized protein | ||||
STRING | XP_009622295.1 | 7e-97 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 4e-66 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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