PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015854-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 280aa MW: 31599.4 Da PI: 9.3316

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015854-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.2	3.5e-32	53	194	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 lp+G++F+P+d+e++ ++L++kv ++ ++ e+i+++d i++++P++Lp v++e + +fF++ +k+y+tg+rk+r+ SMil_00015854-RA_Salv 53 LPAGVKFDPSDQEIL-QHLEAKVYSDAkklhplID--EFIPTIDgengICYTHPQKLP-GVSKEGQVRHFFHRPSKAYTTGTRKRRKv 136 799*********9.999888856643322..23444444445******.556667888**************74 PP NAM 78 ........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v + g kk+Lv+y gr++k+ekt+Wvmh+y+l SMil_00015854-RA_Salv 137 htddddggGGETRWHKTGKTRAVSG---DVRGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 194 6555554433778*****976...789*****66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-36	47	213	IPR003441	NAC domain
PROSITE profile	PS51005	32.416	53	213	IPR003441	NAC domain
Pfam	PF02365	8.6E-15	54	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MTWSNNNNDA LQIKQNYTVS KPDQLRTIIC PSCGHTVKLQ DQYQSGVQDL PGLPAGVKFD 60 PSDQEILQHL EAKVYSDAKK LHPLIDEFIP TIDGENGICY THPQKLPGVS KEGQVRHFFH 120 RPSKAYTTGT RKRRKVHTDD DDGGGGETRW HKTGKTRAVS GDVRGYKKIL VLYTNYGRQR 180 KPEKTNWVMH QYHLGHNQDE KDGELVLSKV FYQTQPRQCA TKPTNADQSS FMSKNQSFVV 240 DYYNPYSNAD APPHLIPNLL LHGDGSSSFL HVPSAATKPK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096365.1	1e-142	NAC domain-containing protein 73
Swissprot	O49459	1e-111	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A4D8ZZP4	1e-161	A0A4D8ZZP4_SALSN; Uncharacterized protein
STRING	XP_002509421.1	1e-135	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28470.1	1e-111	NAC domain containing protein 10

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]