PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015621-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

GRAS

Protein Properties

Length: 515aa MW: 56501.2 Da PI: 5.8751

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015621-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	437.1	1.3e-133	155	514	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lv+ L++cAeav++++l+la+al++++ la ++ +m+R+a+yf+eALa+++++ ++pp ++ s+ l++ f+e+ SMil_00015621-RA_Salv 155 LVHGLMACAEAVQQDNLKLADALVKHVGILAVSQVGAMRRVATYFAEALARKIYK-------IFPPDSSY----SDMLQM--HFYETG 229 6899***********************************************99.......45555553....455444..5* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 P+lkf+h+taNqaIlea++g+ rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+f SMil_00015621-RA_Salv 230 PYLKFAHFTANQAILEAFNGAARVHVIDFGLKQGMQWPALMQALALRPGGPPAIRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEF 317 ************************************************************************************ PP GRAS 177 efnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 ef+ +v+++l+dl+ ++ + +a+aVn+v++lhrll +++++++ vL+l+k ++Pk+v+vveqe +hn++ F++rf eal+y SMil_00015621-RA_Salv 318 EFRGFVTNSLADLDADMVvGAGQVDAVAVNSVYELHRLLGRPGAIQK----VLSLIKAVRPKIVTVVEQEGNHNGNVFVDRFNEALHY 401 ************99344559***********99999999....********************************* PP GRAS 264 ysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349 ys++fdsl a+l + +++++ + +++lgr+i+nvvacegaer+erhetl +Wr+r++++GF+pv+l+++a kqa++ll+ ++ +dgy SMil_00015621-RA_Salv 402 YSTMFDSLeTAGLTQPDSHDSLMTEVYLGRQICNVVACEGAERVERHETLPQWRARFNSVGFRPVHLGSNAFKQASMLLALFAgGDGY 489 ****777899999******************************************************************* PP GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374 rvee++g+l+lgW++rpL+++SaWr SMil_00015621-RA_Salv 490 RVEENEGCLMLGWHTRPLIATSAWR 514 **********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	3.6E-27	31	98	No hit	No description
Pfam	PF12041	1.3E-26	31	87	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	65.601	129	493	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-131	155	514	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MKRGRDRGKR EEAGSAIKTW AEEKQADAGM DELFAVLGYK VKSSEMAEVA EKMEQLEMAM 60 GSAFLSDDTV HYNPSDLSGW VDSMLTISNQ HGSSSSTPTT TAKFIRDDDL RAIPGGAIFS 120 NSVSTKRLKF HENGEAAEEE EAARPVVLQE AGVRLVHGLM ACAEAVQQDN LKLADALVKH 180 VGILAVSQVG AMRRVATYFA EALARKIYKI FPPDSSYSDM LQMHFYETGP YLKFAHFTAN 240 QAILEAFNGA ARVHVIDFGL KQGMQWPALM QALALRPGGP PAIRLTGIGP PQPDNTDALQ 300 QVGWKLAQLA ETIGVEFEFR GFVTNSLADL DADMVVGAGQ VDAVAVNSVY ELHRLLGRPG 360 AIQKVLSLIK AVRPKIVTVV EQEGNHNGNV FVDRFNEALH YYSTMFDSLE TAGLTQPDSH 420 DSLMTEVYLG RQICNVVACE GAERVERHET LPQWRARFNS VGFRPVHLGS NAFKQASMLL 480 ALFAGGDGYR VEENEGCLML GWHTRPLIAT SAWRL

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MKRGRDRGKR EEAGSAIKTW AEEKQADAGM DELFAVLGYK VKSSEMAEVA EKMEQLEMAM  60
GSAFLSDDTV HYNPSDLSGW VDSMLTISNQ HGSSSSTPTT TAKFIRDDDL RAIPGGAIFS  120
NSVSTKRLKF HENGEAAEEE EAARPVVLQE AGVRLVHGLM ACAEAVQQDN LKLADALVKH  180
VGILAVSQVG AMRRVATYFA EALARKIYKI FPPDSSYSDM LQMHFYETGP YLKFAHFTAN  240
QAILEAFNGA ARVHVIDFGL KQGMQWPALM QALALRPGGP PAIRLTGIGP PQPDNTDALQ  300
QVGWKLAQLA ETIGVEFEFR GFVTNSLADL DADMVVGAGQ VDAVAVNSVY ELHRLLGRPG  360
AIQKVLSLIK AVRPKIVTVV EQEGNHNGNV FVDRFNEALH YYSTMFDSLE TAGLTQPDSH  420
DSLMTEVYLG RQICNVVACE GAERVERHET LPQWRARFNS VGFRPVHLGS NAFKQASMLL  480
ALFAGGDGYR VEENEGCLML GWHTRPLIAT SAWRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-65	162	513	26	378	Protein SCARECROW
5b3h_A	1e-65	162	513	25	377	Protein SCARECROW
5b3h_D	1e-65	162	513	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097451.1	0.0	DELLA protein GAI
Swissprot	Q7Y1B6	0.0	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A2G9FYE2	0.0	A0A2G9FYE2_9LAMI; Uncharacterized protein
STRING	Migut.K00894.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	0.0	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]