PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015559-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HSF | ||||||||
Protein Properties | Length: 252aa MW: 28795.5 Da PI: 6.2567 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.5 | 1.8e-32 | 26 | 117 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+++i++d+++++++sw++ng+sf+++d+ +f+ ++Lp+yF+h+nf+SFv QLn YgFkk+ +++ we++ + F++g SMil_00015559-RA_Salv 26 FLTKTFQIVNDANTNSIVSWTQNGDSFIIWDHIKFSAQILPNYFRHNNFSSFVYQLNSYGFKKIGVDHQ--------WEYSSPDFQQG 105 9****************************************************************9994........*********** PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 k +ll+++kr++ SMil_00015559-RA_Salv 106 KPHLLSNMKRRA 117 **********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.1E-46 | 22 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.32E-29 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.3E-33 | 23 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.9E-17 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-29 | 26 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-17 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-17 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSIEIGSGDS KYVAARRFGI GPPPPFLTKT FQIVNDANTN SIVSWTQNGD SFIIWDHIKF 60 SAQILPNYFR HNNFSSFVYQ LNSYGFKKIG VDHQWEYSSP DFQQGKPHLL SNMKRRALQM 120 SPTPQHEMKK LKKQQSDMEL KMVELRRTAD KLEASSKKLM VQWAKACEII VKTEKVVVPA 180 QENEEDAVSL SEKQPLVASS AADDELKSAA MIGDYSVELD NLNKRLFENE DVEASNQHAS 240 AQNFQEWFVD LW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 2e-24 | 24 | 117 | 3 | 106 | Heat shock factor protein 2 |
5d8l_B | 2e-24 | 24 | 117 | 3 | 106 | Heat shock factor protein 2 |
5d8l_D | 2e-24 | 24 | 117 | 3 | 106 | Heat shock factor protein 2 |
5d8l_F | 2e-24 | 24 | 117 | 3 | 106 | Heat shock factor protein 2 |
5d8l_H | 2e-24 | 24 | 117 | 3 | 106 | Heat shock factor protein 2 |
5hdk_A | 3e-24 | 24 | 117 | 8 | 111 | Heat shock factor protein 2 |
5hdk_B | 3e-24 | 24 | 117 | 8 | 111 | Heat shock factor protein 2 |
5hdk_C | 3e-24 | 24 | 117 | 8 | 111 | Heat shock factor protein 2 |
5hdk_D | 3e-24 | 24 | 117 | 8 | 111 | Heat shock factor protein 2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022893710.1 | 4e-47 | heat stress transcription factor A-7a-like | ||||
Swissprot | Q9LVW2 | 5e-35 | HSFA9_ARATH; Heat stress transcription factor A-9 | ||||
TrEMBL | A0A4D8Y8Q4 | 5e-99 | A0A4D8Y8Q4_SALSN; Heat shock transcription factor, other eukaryote |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16875 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54070.1 | 2e-37 | heat shock transcription factor A9 |