PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00015294-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24429.3 Da PI: 5.0079 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g SMil_00015294-RA_Salv 49 PVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATAEMAARAHDVAALAIKG 99 68*****998.**********854...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-12 | 49 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-35 | 50 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 50 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-21 | 50 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.853 | 50 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.66E-32 | 51 | 108 | No hit | No description |
PRINTS | PR00367 | 1.3E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MAELHNSEPE CSNSSTPKNL NHPKRPRDSD EAAAKDGGKR NKSSGSAHPV YRGVRMRAWG 60 KWVSEIREPK KKSRIWLGTF ATAEMAARAH DVAALAIKGG GAILNFPEIS ELLPRPATSS 120 PRDVQAAATK AAAMEHLGES EEDVSTPPAV ELGEIVELPR LYEGGGGGQE ELIVAADVGW 180 DYYINHPLLD SLEDCGLLLG DDNSMVIDDF MSANFQGLLW NHHYS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 42 | 107 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093630.1 | 1e-78 | ethylene-responsive transcription factor TINY-like | ||||
TrEMBL | A0A4D9AHT5 | 1e-97 | A0A4D9AHT5_SALSN; EREBP-like factor | ||||
STRING | Migut.K00522.1.p | 6e-73 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32800.1 | 9e-42 | ERF family protein |