PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015081-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 356aa MW: 39205.6 Da PI: 10.0303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015081-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20	1.2e-06	306	332	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L++l+P + SMil_00015081-RA_Salv 306 SHSLAERARREKISERMKILQDLVPGC 332 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03023	1.2E-9	103	241	IPR004268	Peptidoglycan biosynthesis protein MurJ
CDD	cd00083	1.09E-4	300	336	No hit	No description
SuperFamily	SSF47459	4.84E-8	300	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.734	302	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-8	305	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MIKARIRTPF DLSFPTNSPF QNRCSPIGRP SLRFSQAEAS PHRFRRIQIA FRAEKSFGSP 60 HEDDFSHAEV VVPTGGKSVS DATLVGVATL TSKILGFLRE VTMASVFGVG AVATAFKYAW 120 VLPGFSSSLL GGVNGPIHII MSTTLSKLSE ERGKRLFQHL TTIMFLVGGV VGALVYIFPE 180 YVIQIYAPGL WILAEGQIIR EIAIKQLISY IYCLPSIRCF NLFLLDKDHF EASISISPLL 240 LVIDNLVAEL KFVLHGETSS LGELKVEGEG NSGKGAAAVE RRSKLDELPK QDYIHVRARR 300 GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVRAAIK VKASVIICFT SSRKSC

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MIKARIRTPF DLSFPTNSPF QNRCSPIGRP SLRFSQAEAS PHRFRRIQIA FRAEKSFGSP  60
HEDDFSHAEV VVPTGGKSVS DATLVGVATL TSKILGFLRE VTMASVFGVG AVATAFKYAW  120
VLPGFSSSLL GGVNGPIHII MSTTLSKLSE ERGKRLFQHL TTIMFLVGGV VGALVYIFPE  180
YVIQIYAPGL WILAEGQIIR EIAIKQLISY IYCLPSIRCF NLFLLDKDHF EASISISPLL  240
LVIDNLVAEL KFVLHGETSS LGELKVEGEG NSGKGAAAVE RRSKLDELPK QDYIHVRARR  300
GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVRAAIK VKASVIICFT SSRKSC

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257443	1e-161	KP257443.1 Salvia miltiorrhiza clone 10 basic helix-loop-helix transcription factor mRNA, complete cds.
GenBank	KP257539	1e-161	KP257539.1 Salvia miltiorrhiza clone 106 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012840696.1	2e-80	PREDICTED: uncharacterized protein LOC105961012
TrEMBL	A0A4D9A5E1	1e-113	A0A4D9A5E1_SALSN; Uncharacterized protein
STRING	XP_009799114.1	3e-51	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	3e-25	BIG PETAL P