PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015009-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 448aa    MW: 49069.2 Da    PI: 7.2944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015009-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13261306454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  SMil_00015009-RA_Salv 261 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYIKEL 306
                            799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-5136206IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.847257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18258319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-14260311No hitNo description
PfamPF000101.0E-10261306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-18261319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-17263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDHDLILSAS ASSSSSTTTS TAAVSLVSSV SQPAVLQKKL HHILQTQAEW WAYAILWQTS  60
KDESGRIVLT WADGHFQGTK QKNPPSGSLQ PERKKVMRGI QALIGEGVDP LEGEVTDAEW  120
FYVMSLAQSI SLGDGVVGKA FNSGSLVWLT GANQLRFYNC HRAKEAQIHG MQTMVCIPTF  180
DGVLELGSDL IVAENWNLVQ QAKSLFDPQP TATFQDAPAP KLHLDFLDHS DSDLFAEPME  240
TKRAPKKRGR KPNLGRDAPL NHVEAERQRR EKLNHRFYAL RSVVPNVSRM DKASLLSDAV  300
SYIKELRSKV EELEQQQPHA KPVKTETGDN HSTTTTATVD QLVLSSASPG GGGSEDRGRG  360
RDDQGAVGQV ELPGGAADER HPGAGAAAAP REHVVRERAD AAGRGDQGPR GIEMRACFEK  420
RHSYKINRPL MRHPSIIINY INIMGLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-33362079193Transcription factor MYC3
4rqw_B2e-33362079193Transcription factor MYC3
4rs9_A2e-33362079193Transcription factor MYC3
4yz6_A2e-33362079193Transcription factor MYC3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574620.0KP257462.1 Salvia miltiorrhiza clone 29 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094312.11e-159transcription factor MYC2
TrEMBLA0A0H3YB250.0A0A0H3YB25_SALMI; Basic helix-loop-helix transcription factor
STRINGPOPTR_0002s17750.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-60bHLH family protein