PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014973-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family CPP
Protein Properties Length: 750aa    MW: 82242 Da    PI: 5.1873
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014973-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.44.5e-16465503240
                    TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            ++k+CnCkkskClk+YCeCfaag++C e C C dC+Nk 
  SMil_00014973-RA_Salv 465 SCKRCNCKKSKCLKLYCECFAAGVYCVEPCACIDCFNKP 503
                            689**********************************96 PP
2TCR51.22.5e-16550588139
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  SMil_00014973-RA_Salv 550 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 588
                            589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.7E-18464505IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.337465590IPR005172CRC domain
PfamPF036386.6E-12467502IPR005172CRC domain
SMARTSM011147.5E-18550591IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.3E-12552588IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MGDCRGEREL MDTPERTNNT QIATSIAKFE EVGTGFAGFE FSVILFSDDS PIYMQDSPVF  60
NFLNNLSPIK PVKPVHISQT INPLSFSSLP SVFSSPHLTS LRESRFLRRH SLSDPSKPEF  120
SSDDGNTVDP NMQVAMNLDE QKENLDANCE NAGEPSYGCS KLVVEFAETL NCELDIVNSS  180
LSCLKAKRVA EYACTSSAFV EDQRSVNMGE ANLEELVNTN GNSWDSLIAD ASDLLIFESP  240
NAEAYNEPVD PATTFYRSIR NAIQNAQSLG AVVCGERGNT AENMPRQPEE GTEMIENESF  300
WSMPWMRRRC LVFEMAGGRR KHMEDGSASD SPLLLTASDG NASSDNQIAL TKTENDCSRL  360
LPGIGLHLNA LAATPKDFKI VNHESSASGR LLIGPSSSAN LPPPSTSQDL LSDYSLEREI  420
DTFESGGLLM EDHSRESGYI ANEDINPSSP KKRRRRSEQV GDGESCKRCN CKKSKCLKLY  480
CECFAAGVYC VEPCACIDCF NKPVHEDTVL ATRKQIESRN PLAFAPKVIR TSDSLSEIVD  540
DFTNTPASAR HKRGCNCKKS GCLKKYCECY QGGVGCSINC RCEGCKNAFG RKDGSSASAS  600
EHEHEEDENG TTEKATLDRR SIYKAAIRDD LDQCMDTVPP ATPLGGGRQQ QPFQSFSKKR  660
PPRASFPPIC SYSGFGKSSL VFPPPPKLRT CFEEEEEMPH FLVGGAGSPI KSSSPNRKRV  720
SPPQTSSGLR SSRKLVLQSI PSFPSLTPNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1846758712120Protein lin-54 homolog
5fd3_B4e-1846758712120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450455KKRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00370DAPTransfer from AT3G22780Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090684.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
TrEMBLA0A4D8Y9450.0A0A4D8Y945_SALSN; Uncharacterized protein
STRINGMigut.G00370.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-116Tesmin/TSO1-like CXC domain-containing protein