PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014715-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 481aa    MW: 53039.2 Da    PI: 6.5198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014715-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43.1e-09303350455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  SMil_00014715-RA_Salv 303 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 350
                            8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.20E-10297354No hitNo description
SuperFamilySSF474594.58E-17297368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16299367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6303350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
LGSKNLEKMD KDYFMNAGIP PPQPLHFETS MPIPWSSDQS FLNPNSAMDH HQFDSSWTSM  60
ATTTTTTTTT NADGFALRQL IGKLGGAADR LSPTLNLPLL DQINLPNLAT TSTPPPLPSL  120
AADPGFAERA AKFSCFGSRS FNGRTSTQHP QPSQAEPMRG SNPEPKLPRV ASSPSLNRSP  180
PPSRIKPVLE MRPAERKFGA SSNEESSVSE QIPSGETGSK NEMNSRKRKA ASRGKNKDDK  240
SNSAKGGEGD DDGNSKRSKQ TENSENEEEC NNKADENKAN QKPPEPPKDY IHVRARRGQA  300
TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL  360
ASVNPELDFN MESLLSKDMY QSTSLPQQQM YPLDSSAPAF YHHQNVQHQQ LHGTTISSVD  420
PLPLDASLGI QMPSVDGFAE NLPQFPAFTE DDLHSIVQMG FIQNSVHFPV QNQTSNMKVE  480
L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574590.0KP257459.1 Salvia miltiorrhiza clone 26 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089038.10.0transcription factor bHLH62 isoform X2
TrEMBLA0A0H3YBR50.0A0A0H3YBR5_SALMI; Basic helix-loop-helix transcription factor
STRINGEMJ023811e-138(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-92bHLH family protein