PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014368-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 98aa    MW: 10655.1 Da    PI: 11.5018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014368-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-182473255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            ykG+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  SMil_00014368-RA_Salv 24 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAIAAARAYDTAVYYLRG 73
                           6******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-332487IPR001471AP2/ERF domain
PROSITE profilePS5103221.972481IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-212483IPR016177DNA-binding domain
PRINTSPR003671.5E-112536IPR001471AP2/ERF domain
PfamPF008472.1E-112573IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-302582IPR001471AP2/ERF domain
CDDcd000182.66E-232583No hitNo description
PRINTSPR003671.5E-116383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MEGGGASAGG GAARVSSRRR SEKPYKGIRM RKWGKWVAEI REPNKRSRIW LGSYSTAIAA  60
ARAYDTAVYY LRGPTAKLNF PDQIAAAGEG SRTSPPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-162384466ATERF1
3gcc_A5e-162384466ATERF1
5wx9_A7e-1625831574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022863906.11e-43ethylene-responsive transcription factor ERF011-like
SwissprotQ9FH943e-36ERF10_ARATH; Ethylene-responsive transcription factor ERF010
SwissprotQ9SW633e-36RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A4D8YUT83e-48A0A4D8YUT8_SALSN; EREBP-like factor
STRINGMigut.L00172.1.p5e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.12e-24related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]