PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00014017-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 19065.8 Da PI: 6.9588 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.7e-39 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+k+Cv+apyf ++q +++fa+vh++FGasn +kll ++p++ r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ SMil_00014017-RA_Salv 10 PCGACKFLRRKCVKGCVFAPYFDSDQgTAHFAAVHRVFGASNASKLLLRIPPHCRLDAVVTLCYEALARVRDPVYGCVAHIFTLQQQV 97 7***********************9989************************************************************ PP DUF260 88 eqlkaelallkee 100 +l+aela+++++ SMil_00014017-RA_Salv 98 VNLQAELAYTQAR 110 ********99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.744 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-38 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MSCDGGGGGP CGACKFLRRK CVKGCVFAPY FDSDQGTAHF AAVHRVFGAS NASKLLLRIP 60 PHCRLDAVVT LCYEALARVR DPVYGCVAHI FTLQQQVVNL QAELAYTQAR ISTLQCGPSL 120 PILSSVVDAS PSSMDMVSFC SSVDQEVEDD GDLQSLAREY VSRYFPGVRF MPPTPH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-39 | 6 | 117 | 7 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-39 | 6 | 117 | 7 | 117 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090856.2 | 6e-96 | LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 2e-66 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A4D8ZUD4 | 1e-109 | A0A4D8ZUD4_SALSN; Uncharacterized protein | ||||
STRING | cassava4.1_030486m | 7e-85 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45410.1 | 5e-69 | LOB domain-containing protein 19 |