PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013961-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 28810.5 Da PI: 8.0918 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 101.5 | 3.2e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye++s SMil_00013961-RA_Salv 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 92.5 | 7.4e-31 | 78 | 167 | 7 | 96 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 ++ e++++s++qe++kLk+++e+Lqr+qRhllGe+L++Ls keLq+Le+qLe +l + R++K+++l+eq+eel +ke++l + nk+L SMil_00013961-RA_Salv 78 ENSGERETQSWYQEFSKLKAKYESLQRTQRHLLGENLGPLSSKELQNLEKQLEGALAQARQRKTHMLMEQMEELSRKERQLGDMNKQL 165 33578999*******************************************************************************9 PP K-box 95 rk 96 + SMil_00013961-RA_Salv 166 KI 167 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 34.16 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.01E-45 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 8.24E-34 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.3E-28 | 80 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.942 | 85 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFAST 60 STTETLERYH RCALNHQENS GERETQSWYQ EFSKLKAKYE SLQRTQRHLL GENLGPLSSK 120 ELQNLEKQLE GALAQARQRK THMLMEQMEE LSRKERQLGD MNKQLKIRVS LEMSSLEAEG 180 QHTGALSCPW NDGGGGATSA GSSGFPLHVI TPPNPMDVEP EPVLEIGYNH YNVGEGSSIP 240 RSMAVDNNFI QGWTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-22 | 1 | 81 | 1 | 95 | MEF2C |
5f28_B | 1e-22 | 1 | 81 | 1 | 95 | MEF2C |
5f28_C | 1e-22 | 1 | 81 | 1 | 95 | MEF2C |
5f28_D | 1e-22 | 1 | 81 | 1 | 95 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093185.1 | 1e-146 | MADS-box transcription factor 6 | ||||
Swissprot | Q8LLR1 | 1e-127 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0A4D8ZVA3 | 1e-153 | A0A4D8ZVA3_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.B01667.1.p | 1e-136 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 3e-96 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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